Package | Description |
---|---|
org.anchoranalysis.bean.shared.dictionary |
Setting, referencing and initializing key-value parameters.
|
org.anchoranalysis.bean.shared.path |
Defines a root path directory on the filesystem whre files are read / written.
|
org.anchoranalysis.core.identifier.provider.store |
Data structures like
NamedProvider with
supporting for adding new elements. |
org.anchoranalysis.feature.initialization |
Initialization parameters used for beans in
org.anchoranalysis.feature.bean . |
org.anchoranalysis.image.bean.nonbean.init |
Classes that aren't AnchorBeans that pertain to the initialization of image-related beans.
|
org.anchoranalysis.image.core.stack.named |
A collection of
Stack s, each with a unique identifier
as a name. |
org.anchoranalysis.image.io.channel.input |
Non-bean classes for reading a
Channel from the
filesystem. |
org.anchoranalysis.image.io.channel.map |
Non-bean classes for a mapping of names to
Channel s. |
org.anchoranalysis.image.io.stack.input |
Non-bean classes for reading a
Stack from the
filesystem. |
org.anchoranalysis.image.io.stack.time |
A time-sequence of
Stack s. |
org.anchoranalysis.mpp.init |
Parameters used to initialize certain types of beans.
|
org.anchoranalysis.mpp.io.input |
Non-beans for reading data structures related to marked point processes from the file system.
|
org.anchoranalysis.mpp.io.output |
Non-beans for writing data structures related to marked point processes from the file system.
|
org.anchoranalysis.plugin.io.bean.input.stack |
Implementations of
InputManager that process Stack s. |
Modifier and Type | Method and Description |
---|---|
NamedProviderStore<Dictionary> |
DictionaryInitialization.getDictionaries()
Named-store of
Dictionary objects. |
Modifier and Type | Method and Description |
---|---|
NamedProviderStore<Path> |
FilePathInitialization.getFilePaths()
Named-store of file-paths.
|
Modifier and Type | Class and Description |
---|---|
class |
EagerEvaluationStore<T>
Evaluates items immediately via the
StoreSupplier as soon as they are added. |
class |
LazyEvaluationStore<T>
Lazily delays evaluating items until when they are first retrieved.
|
Modifier and Type | Method and Description |
---|---|
<T> NamedProviderStore<T> |
SharedObjects.getOrCreate(Class<?> key)
Gets an existing store, or creates a new one
|
Modifier and Type | Method and Description |
---|---|
NamedProviderStore<FeatureList<FeatureInput>> |
FeatureRelatedInitialization.getFeatureLists()
Gets the underlying
NamedProviderStore that provides shared-features. |
Modifier and Type | Method and Description |
---|---|
NamedProviderStore<BinarySegmentation> |
ImageInitialization.binarySegmentations()
A collection of
BinarySegmentation s, indexed by name. |
NamedProviderStore<Channel> |
ImageInitialization.channels()
A collection of
Channel s, indexed by name. |
NamedProviderStore<Dictionary> |
ImageInitialization.dictionaries()
Named-store of
Dictionary s. |
NamedProviderStore<Path> |
ImageInitialization.filePaths()
Named-store of file-paths.
|
NamedProviderStore<Histogram> |
ImageInitialization.histograms()
A collection of
Histogram s, indexed by name. |
NamedProviderStore<Mask> |
ImageInitialization.masks()
A collection of
Mask s, indexed by name. |
NamedProviderStore<ObjectCollection> |
ImageInitialization.objects()
A collection of
ObjectCollection s, indexed by name. |
NamedProviderStore<Stack> |
ImageInitialization.stacks()
A collection of
Stack s, indexed by name. |
Modifier and Type | Method and Description |
---|---|
<S extends InitializableBean<S,V>> |
PopulateStoreFromDefine.copyInitialize(Class<?> defineClass,
NamedProviderStore<S> destination)
Copies objects of a particular class from the define and initializes.
|
<S extends InitializableBean<?,V> & Provider<T>,T> |
PopulateStoreFromDefine.copyProviderInitialize(Class<?> defineClass,
NamedProviderStore<T> destination)
Copies objects of a particular class (which must be a
Provider ) from define
and initializes each. |
<S extends AnchorBean<S>> |
PopulateStoreFromDefine.copyWithoutInitialize(Class<?> defineClass,
NamedProviderStore<S> destination)
Copies objects of a particular class from the define without performing any
initialization.
|
Modifier and Type | Class and Description |
---|---|
class |
NamedStacks
A set of image-stacks each with a name.
|
Modifier and Type | Method and Description |
---|---|
void |
NamedChannelsInput.addToStoreInferNames(NamedProviderStore<TimeSeries> stacks,
int seriesIndex,
Logger logger) |
void |
NamedChannelsInput.addToStoreWithName(String name,
NamedProviderStore<TimeSeries> stacks,
int seriesIndex,
Logger logger) |
Modifier and Type | Method and Description |
---|---|
void |
OpenedNamedChannels.addAsSeparateChannels(NamedProviderStore<TimeSeries> destination,
int timeIndex,
Logger logger) |
void |
NamedChannelsConcatenate.addAsSeparateChannels(NamedProviderStore<TimeSeries> stackCollection,
int timeIndex,
Logger logger) |
void |
NamedChannelsMap.addAsSeparateChannels(NamedProviderStore<TimeSeries> destination,
int timeIndex,
Logger logger)
|
Modifier and Type | Method and Description |
---|---|
default void |
ProvidesStackInput.addToStoreInferNames(NamedProviderStore<Stack> store,
Logger logger)
Adds the current object to a named-store of stacks (using the default series).
|
void |
ProvidesStackInput.addToStoreInferNames(NamedProviderStore<TimeSeries> stacks,
int seriesIndex,
Logger logger)
Adds any stacks exposed by the current element to a named-store of stacks - inferring the
names of the
Stack s. |
void |
ProvidesStackInput.addToStoreWithName(String name,
NamedProviderStore<TimeSeries> stacks,
int seriesIndex,
Logger logger)
Adds any stacks exposed by the current element to a named-store of stacks - with a particular
name.
|
Modifier and Type | Class and Description |
---|---|
class |
ExtractFrameStore
Exposes a
NamedProviderStore<TimeSeries> as a NamedProviderStore<Stack> by
extracting a frame from each series. |
Constructor and Description |
---|
ExtractFrameStore(NamedProviderStore<Stack> stacks)
Creates to extract at time-index 0.
|
ExtractFrameStore(NamedProviderStore<Stack> stacks,
int timeIndex)
Creates to extract at time-index
timeIndex . |
Modifier and Type | Method and Description |
---|---|
NamedProviderStore<PointsFitter> |
PointsInitialization.getPointFitters() |
NamedProviderStore<MarkBounds> |
MarksInitialization.markBounds() |
NamedProviderStore<MarkCollectionProposer> |
MarksInitialization.markCollectionProposers() |
NamedProviderStore<MarkMergeProposer> |
MarksInitialization.markMergeProposers() |
NamedProviderStore<RandomCollection<MarkPair<Mark>>> |
MarksInitialization.markPairs() |
NamedProviderStore<MarkProposer> |
MarksInitialization.markProposers() |
NamedProviderStore<MarkCollection> |
MarksInitialization.marks() |
NamedProviderStore<MarkSplitProposer> |
MarksInitialization.markSplitProposers() |
Modifier and Type | Method and Description |
---|---|
void |
OperationMap.addToStore(NamedProviderStore<T> namedStore,
Logger logger) |
void |
MultiInputSubMap.addToStore(NamedProviderStore<T> namedStore,
Logger logger)
Copies all the existing entries into a
NamedProviderStore . |
void |
StackWithMap.addToStore(NamedProviderStore<TimeSeries> stackCollection,
int seriesNum,
Logger logger) |
void |
StackWithMap.addToStore(NamedProviderStore<TimeSeries> stackCollection,
Logger logger) |
void |
MultiInput.addToStoreInferNames(NamedProviderStore<TimeSeries> stacks,
int seriesIndex,
Logger logger) |
void |
MultiInput.addToStoreWithName(String name,
NamedProviderStore<TimeSeries> stacks,
int seriesIndex,
Logger logger) |
Modifier and Type | Method and Description |
---|---|
static DisplayStack |
BackgroundCreator.createBackground(NamedProviderStore<Stack> stackCollection,
String backgroundStackName,
StackDisplayer displayer) |
Modifier and Type | Method and Description |
---|---|
void |
ConvertNamedChannelsInputToStack.addToStoreInferNames(NamedProviderStore<TimeSeries> stacks,
int seriesIndex,
Logger logger) |
void |
ConvertNamedChannelsInputToStack.addToStoreWithName(String name,
NamedProviderStore<TimeSeries> stacks,
int seriesIndex,
Logger logger) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.