Uses of Interface
org.anchoranalysis.core.log.MessageLogger

Packages that use MessageLogger

Package	Description
org.anchoranalysis.core.log	Interfaces to log messages, both information and error messages.
org.anchoranalysis.core.log.error	Mechanism for reporting errors (exceptions/throwables) to the user.
org.anchoranalysis.core.system	Utilities for interacting with the operating system or computer system generally
org.anchoranalysis.experiment.bean.log	Different approaches to where messages on the progress/status of an experiment are logged to.
org.anchoranalysis.experiment.log	Helpful classes for logging.
org.anchoranalysis.experiment.task	Non-bean classes related to a Task.
org.anchoranalysis.experiment.task.processor	Non-bean classes related to JobProcessor.
org.anchoranalysis.io.output.outputter	Classes for outputting to particular directories.
org.anchoranalysis.plugin.image.bean.blur	Filters that perform blurring.
org.anchoranalysis.plugin.image.intensity.level	Non-beans for calculating a thresholding level from itensity values.
org.anchoranalysis.plugin.image.object.merge.condition	Conditions for merging ObjectMasks.
org.anchoranalysis.plugin.mpp.shared	Shared-state use across tasks in this JAR.
org.anchoranalysis.test	Testing utilities and fixtures with no greater downstream dependency than anchor-core.

Uses of MessageLogger in org.anchoranalysis.core.log

Classes in org.anchoranalysis.core.log that implement MessageLogger

Modifier and Type	Class	Description
class	NullMessageLogger	Does nothing with with any messages logged.

Methods in org.anchoranalysis.core.log that return MessageLogger

Modifier and Type	Method	Description
MessageLogger	Logger.messageLogger()	Where messages are logged to.

Constructors in org.anchoranalysis.core.log with parameters of type MessageLogger

Modifier	Constructor	Description
	Logger(MessageLogger messageLogger)	Constructs with an error-reporter that writes into the message logger.
	Logger(MessageLogger messageLogger, ErrorReporter errorReporter)	Creates a new Logger instance.

Uses of MessageLogger in org.anchoranalysis.core.log.error

Constructors in org.anchoranalysis.core.log.error with parameters of type MessageLogger

Modifier	Constructor	Description
	ErrorReporterIntoLog(MessageLogger logger)	Create for a message-logger.

Uses of MessageLogger in org.anchoranalysis.core.system

Methods in org.anchoranalysis.core.system with parameters of type MessageLogger

Modifier and Type	Method	Description
static void	MemoryUtilities.logMemoryUsage(String identifier, MessageLogger logger)	Logs a message to logger describing current memory usage of the JVM.

Uses of MessageLogger in org.anchoranalysis.experiment.bean.log

Classes in org.anchoranalysis.experiment.bean.log that implement MessageLogger

Modifier and Type	Class	Description
class	StatefulNullMessageLogger	Does nothing (i.e. simply ignores) with any messages logged.

Methods in org.anchoranalysis.experiment.bean.log with parameters of type MessageLogger

Modifier and Type	Method	Description
StatefulMessageLogger	LoggingDestination.createWithLogFallback(OutputterChecked outputter, MessageLogger fallbackErrorReporter, ExecutionArguments arguments, boolean detailedLogging)	Creates a logger for this destination - and if anything goes wrong reporting fallback into a log.

Uses of MessageLogger in org.anchoranalysis.experiment.log

Subinterfaces of MessageLogger in org.anchoranalysis.experiment.log

Modifier and Type	Interface	Description
interface	StatefulMessageLogger	A MessageLogger that can be started and stopped, and is aware of this state.

Classes in org.anchoranalysis.experiment.log that implement MessageLogger

Modifier and Type	Class	Description
class	ConsoleMessageLogger	Logs messages to the console, STDOUT.
class	FailureOnlyMessageLogger	Writes text to a file, but only if FailureOnlyMessageLogger.close(boolean, boolean) is called with successful==true.
class	MessageLoggerIntoString	Logs error messages into a String via StringBuilder.
class	MultipleLoggers	Logs messages to multiple other loggers.
class	TextFileMessageLogger	Logs messages to a text-file.

Uses of MessageLogger in org.anchoranalysis.experiment.task

Constructors in org.anchoranalysis.experiment.task with parameters of type MessageLogger

Modifier	Constructor	Description
	ErrorReporterForTask(MessageLogger logger)	Create to use a particular logger to report errors.

Uses of MessageLogger in org.anchoranalysis.experiment.task.processor

Constructor parameters in org.anchoranalysis.experiment.task.processor with type arguments of type MessageLogger

Modifier	Constructor	Description
	JobStartStopLogger(String jobDescriptionText, ConcurrentJobMonitor monitor, boolean showHashSeperators, int showOngoingJobsLessThan, Optional<MessageLogger> logger)	Creates a job-logger.
	MonitoredSequentialExecutor(Predicate<T> execFunc, Function<T,String> dscrFunc, Optional<MessageLogger> logger, boolean showHashSeperators)	Creates a new MonitoredSequentialExecutor instance.

Uses of MessageLogger in org.anchoranalysis.io.output.outputter

Methods in org.anchoranalysis.io.output.outputter that return MessageLogger

Modifier and Type	Method	Description
default MessageLogger	InputOutputContext.getMessageReporter()	The associated message reporter.

Uses of MessageLogger in org.anchoranalysis.plugin.image.bean.blur

Methods in org.anchoranalysis.plugin.image.bean.blur with parameters of type MessageLogger

Modifier and Type	Method	Description
void	BlurGaussian3D.blur(VoxelsUntyped voxels, Dimensions dimensions, MessageLogger logger)
void	BlurGaussianEachSlice2D.blur(VoxelsUntyped voxels, Dimensions dimensions, MessageLogger logger)
abstract void	BlurStrategy.blur(VoxelsUntyped voxels, Dimensions dimensions, MessageLogger logger)	Applies the blur operation to the given voxels.
protected double	BlurStrategy.calculateSigma(Dimensions dimensions, MessageLogger logger)	Calculates the sigma value to use for blurring, considering the dimensions and whether sigma is in meters.

Uses of MessageLogger in org.anchoranalysis.plugin.image.intensity.level

Methods in org.anchoranalysis.plugin.image.intensity.level with parameters of type MessageLogger

Modifier and Type	Method	Description
static LevelResultCollection	LevelResultCollectionFactory.createCollection(Channel channel, ObjectCollection objects, CalculateLevel calculateLevel, int numberDilations, MessageLogger logger)	Creates a LevelResultCollection from a channel and object collection.

Uses of MessageLogger in org.anchoranalysis.plugin.image.object.merge.condition

Constructors in org.anchoranalysis.plugin.image.object.merge.condition with parameters of type MessageLogger

Modifier	Constructor	Description
	DistanceCondition(Optional<UnitValueDistance> maxDistance, boolean suppressZ, MessageLogger logger)	Creates a new DistanceCondition instance.

Uses of MessageLogger in org.anchoranalysis.plugin.mpp.shared

Methods in org.anchoranalysis.plugin.mpp.shared with parameters of type MessageLogger

Modifier and Type	Method	Description
Optional<U>	SharedStateRememberConverted.findConvertedInputFor(NamedChannelsInput unconverted, MessageLogger logger)	Finds a converted-input that has been remembered.
void	ConvertedInput.logConversionMessages(MessageLogger logger)	Logs any messages stored from from conversion.

Uses of MessageLogger in org.anchoranalysis.test

Methods in org.anchoranalysis.test that return MessageLogger

Modifier and Type	Method	Description
static MessageLogger	LoggerFixture.suppressedMessageLogger()	A MessageLogger that doesn't output anything.