Uses of Class
org.anchoranalysis.feature.bean.list.FeatureList

Packages that use FeatureList

Package	Description
org.anchoranalysis.feature.bean	Beans pertaining to feature-calculation.
org.anchoranalysis.feature.bean.list	A feature-list (custom list type for features) and associated providers.
org.anchoranalysis.feature.bean.operator	Features that are sufficiently generic to work on any input-type.
org.anchoranalysis.feature.calculate	Sub-feature units of calculation that can be cached.
org.anchoranalysis.feature.calculate.bound	Interfaces like FeatureCalculator but bound to particular features.
org.anchoranalysis.feature.initialization	Initialization parameters used for beans in org.anchoranalysis.feature.bean.
org.anchoranalysis.feature.session	A defined context in which one or more features are provided inputs and produce results.
org.anchoranalysis.feature.session.cache	Creates a FeatureCalculationCache to use during feature-calculations.
org.anchoranalysis.feature.session.replace	Strategies on whether to reuse or invalidate a feature-input's cache.
org.anchoranalysis.feature.shared	Features shared for referencing among calculations.
org.anchoranalysis.feature.store	A collection of named-Features.
org.anchoranalysis.image.feature.bean.evaluator	Beans that define context (which feature, which energy-stack) for evaluating feature-inputs.
org.anchoranalysis.image.feature.calculator	Implementations of FeatureCalculatorMulti related to images, especially to create tables of feature-calculations.
org.anchoranalysis.image.feature.calculator.merged	A particular implementation of FeatureCalculatorMulti for feature-calculations based upon pairs of image-objects.
org.anchoranalysis.mpp.feature.addcriteria	Criteria for adding edges during optimization of marked-point-processes.
org.anchoranalysis.mpp.feature.energy.scheme	Factorized form of storing the energy during an energy-minimization optimization scheme.
org.anchoranalysis.plugin.image.feature.bean.list	Implementations of FeatureListProvider.
org.anchoranalysis.plugin.image.feature.bean.list.pair	Implementations of FeatureListProvider with input-type FeatureInputPairObjects.
org.anchoranalysis.plugin.image.feature.bean.list.permute	Implementations of FeatureListProvider that derive new features with permuted property-values.
org.anchoranalysis.plugin.image.task.bean.feature.source	Source of rows in feature-tables with FeatureSource and derived classes.
org.anchoranalysis.plugin.image.task.feature	Non-bean classes pertaining to Features as used in tasks.
org.anchoranalysis.plugin.image.task.feature.calculator	Non-beans for calculating Features.
org.anchoranalysis.plugin.opencv.bean.feature	Extracting features using OpenCV.
org.anchoranalysis.test.feature	Testing utilities and fixtures with no greater downstream dependency than anchor-feature.
org.anchoranalysis.test.feature.plugins	Testing utilities and fixtures with no greater downstream dependency than anchor-image-feature or anchor-mpp.

Uses of FeatureList in org.anchoranalysis.feature.bean

Methods in org.anchoranalysis.feature.bean that return FeatureList

Modifier and Type	Method	Description
final FeatureList<FeatureInput>	Feature.createListChildFeatures()	Returns a list of Features that exist as bean-properties of this feature, either directly or in lists.

Uses of FeatureList in org.anchoranalysis.feature.bean.list

Methods in org.anchoranalysis.feature.bean.list that return FeatureList

Modifier and Type	Method	Description
FeatureList<T>	FeatureList.append(Optional<FeatureList<T>> featureList)	Appends the features one or more (optional) feature-lists to the existing list.
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.empty()	Creates an empty list of features
<S extends FeatureInput, E extends Exception> FeatureList<S>	FeatureList.filterAndMap(Predicate<Feature<T>> predicate, CheckedFunction<Feature<T>,Feature<S>,E> mappingFunction)	Filters inputs and then performs a map(org.anchoranalysis.core.functional.checked.CheckedFunction<org.anchoranalysis.feature.bean.Feature<T>, org.anchoranalysis.feature.bean.Feature<S>, E>).
static <S, T extends FeatureInput, E extends Exception> FeatureList<T>	FeatureListFactory.flatMapFromOptional(Iterable<S> iterable, CheckedFunction<S,Optional<FeatureList<T>>,E> flatMapFunc)	Creates a new feature-list by flat-mapping an iterable to an optional feature
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.from(Feature<T>... feature)	Creates a list for one or more features
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.fromIterable(Iterable<Feature<T>> iterable)	Creates a list of features from an iterable
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.fromProvider(Provider<Feature<T>> featureProvider)	Creates a list for a single-feature created from a provider
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.fromProviders(Collection<FeatureProvider<T>> providers)	Creates a list of features from a collection of feature-providers
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.fromStream(Stream<Feature<T>> stream)	Creates a list of features from a stream
FeatureList<T>	Define.get()
FeatureList<T>	DefinedNamed.get()
FeatureList<T>	DefineSingle.get()
FeatureList<FeatureInput>	PrependName.get()
<S extends FeatureInput, E extends Exception> FeatureList<S>	FeatureList.map(CheckedFunction<Feature<T>,Feature<S>,E> mapFunc)	Creates a new feature-list where each feature is the result of applying a map-function to an existing feature.
static <S, T extends FeatureInput, E extends Exception> FeatureList<T>	FeatureListFactory.mapFrom(Iterable<S> iterable, CheckedFunction<S,Feature<T>,E> mapFunc)	Creates a new feature-list by mapping an Iterable to Feature
static <S, T extends FeatureInput, E extends Exception> FeatureList<T>	FeatureListFactory.mapFromFiltered(Iterable<S> iterable, Predicate<S> predicate, CheckedFunction<S,Feature<T>,E> mapFunc)	Creates a new feature-list by filtering an iterable and then mapping it to a feature
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.mapFromRange(int startInclusive, int endExclusive, IntFunction<Feature<T>> mapFunc)	Creates a new feature-list by mapping integers (from a range) each to a feature
static <T extends FeatureInput, E extends Exception> FeatureList<T>	FeatureListFactory.mapFromRangeOptional(int startInclusive, int endExclusive, Class<? extends Exception> throwableClass, CheckedIntFunction<Optional<Feature<T>>,E> mapFunc)	Creates a new feature-list by mapping integers (from a range) each to an optional feature
FeatureList<T>	FeatureList.shallowDuplicate()	Creates a new feature-list which contains identical elements.
FeatureList<T>	FeatureList.sort(Comparator<Feature<T>> comparator)	Creates a new feature-list sorted in a particular order.
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.wrapDuplicate(List<Feature<T>> list)	Wraps an existing list, WITHOUT reusing the list in the internals of the FeatureList i.e. create a new list internally
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.wrapReuse(List<Feature<T>> list)	Wraps an existing list, reusing the list in the internals of the FeatureList

Methods in org.anchoranalysis.feature.bean.list with parameters of type FeatureList

Modifier and Type	Method	Description
void	FeatureList.addAll(FeatureList<? extends T> toAdd)	Add all the features in other to the current list.

Method parameters in org.anchoranalysis.feature.bean.list with type arguments of type FeatureList

Modifier and Type	Method	Description
FeatureList<T>	FeatureList.append(Optional<FeatureList<T>> featureList)	Appends the features one or more (optional) feature-lists to the existing list.
static <S, T extends FeatureInput, E extends Exception> FeatureList<T>	FeatureListFactory.flatMapFromOptional(Iterable<S> iterable, CheckedFunction<S,Optional<FeatureList<T>>,E> flatMapFunc)	Creates a new feature-list by flat-mapping an iterable to an optional feature

Uses of FeatureList in org.anchoranalysis.feature.bean.operator

Methods in org.anchoranalysis.feature.bean.operator with parameters of type FeatureList

Modifier and Type	Method	Description
void	FeatureFromList.setList(FeatureList<T> list)	Assigns the list of features to use.

Constructors in org.anchoranalysis.feature.bean.operator with parameters of type FeatureList

Modifier	Constructor	Description
protected	FeatureFromList(FeatureList<T> featureList)	Create from a list of features.
	Sum(FeatureList<T> features)	Create with a list of Features which become summed.

Uses of FeatureList in org.anchoranalysis.feature.calculate

Methods in org.anchoranalysis.feature.calculate with parameters of type FeatureList

Modifier and Type	Method	Description
ResultsVector	FeatureCalculationInput.calculate(FeatureList<T> features)	Calculates the results of several features using this input.
default ResultsVector	FeatureCalculator.calculate(FeatureList<T> features, FeatureCalculationInput<T> input)	Calculates results for a list of features with a particular input, throwing an exception if a calculation fails.

Uses of FeatureList in org.anchoranalysis.feature.calculate.bound

Methods in org.anchoranalysis.feature.calculate.bound with parameters of type FeatureList

Modifier and Type	Method	Description
ResultsVector	FeatureCalculatorMulti.calculate(T input, FeatureList<T> featuresSubset)	Calculates the results of a subset of the features with a particular input.
ResultsVector	FeatureCalculatorMultiChangeInput.calculate(T input, FeatureList<T> featuresSubset)

Uses of FeatureList in org.anchoranalysis.feature.initialization

Methods in org.anchoranalysis.feature.initialization that return types with arguments of type FeatureList

Modifier and Type	Method	Description
NamedProviderStore<FeatureList<FeatureInput>>	FeatureRelatedInitialization.getFeatureLists()	Gets the underlying NamedProviderStore that provides shared-features.

Uses of FeatureList in org.anchoranalysis.feature.session

Methods in org.anchoranalysis.feature.session with parameters of type FeatureList

Modifier and Type	Method	Description
ResultsVector	SequentialSession.calculate(T input, FeatureList<T> featuresSubset)
ResultsVector	SessionInputSequential.calculate(FeatureList<T> features)
static <T extends FeatureInput> FeatureCalculatorMulti<T>	FeatureSession.with(FeatureList<T> features, Logger logger)	Starts a feature-session for a list of features, with default initialization.
static <T extends FeatureInput> FeatureCalculatorMulti<T>	FeatureSession.with(FeatureList<T> features, FeatureInitialization initialization, Optional<SharedFeatures> sharedFeatures, Logger logger, BoundReplaceStrategy<T,? extends ReplaceStrategy<T>> replaceStrategy)	Starts a feature-session for a list of features, with particular initialization, and a replaceStrategy.
static <T extends FeatureInput> FeatureCalculatorMulti<T>	FeatureSession.with(FeatureList<T> features, FeatureInitialization initialization, SharedFeatures sharedFeatures, Logger logger)	Starts a feature-session for a list of features, with particular initialization.

Uses of FeatureList in org.anchoranalysis.feature.session.cache

Constructors in org.anchoranalysis.feature.session.cache with parameters of type FeatureList

Modifier	Constructor	Description
	HorizontalCacheCreator(FeatureList<? extends FeatureInput> namedFeatures, SharedFeatures sharedFeatures, FeatureInitialization initialization, Logger logger)	Creates a new HorizontalCacheCreator instance.

Uses of FeatureList in org.anchoranalysis.feature.session.replace

Methods in org.anchoranalysis.feature.session.replace with parameters of type FeatureList

Modifier and Type	Method	Description
ReplaceStrategy<T>	BoundReplaceStrategy.createOrReuse(FeatureList<T> features, FeatureInitialization initialization, SharedFeatures sharedFeatures, Logger logger)	Creates a ReplaceStrategy for a particular CacheCreator, or reuses any previously-created ReplaceStrategy if it exists.

Uses of FeatureList in org.anchoranalysis.feature.shared

Methods in org.anchoranalysis.feature.shared with parameters of type FeatureList

Modifier and Type	Method	Description
void	SharedFeatures.addFromList(FeatureList<FeatureInput> list)	Add features from a feature-list.
void	SharedFeatures.removeIfExists(FeatureList<FeatureInput> featuresToRemove)	Remove all features, if they currently exist, from features.

Method parameters in org.anchoranalysis.feature.shared with type arguments of type FeatureList

Modifier and Type	Method	Description
void	SharedFeatures.addFromProviders(NamedProvider<FeatureList<FeatureInput>> provider)	Add features from a NamedProvider of feature-lists.

Uses of FeatureList in org.anchoranalysis.feature.store

Methods in org.anchoranalysis.feature.store that return FeatureList

Modifier and Type	Method	Description
FeatureList<T>	NamedFeatureStore.features()	All Features in the store, in identical order.

Uses of FeatureList in org.anchoranalysis.image.feature.bean.evaluator

Method parameters in org.anchoranalysis.image.feature.bean.evaluator with type arguments of type FeatureList

Modifier and Type	Method	Description
NamedFeatureCalculatorMulti<T>	FeatureListEvaluator.createFeatureSession(UnaryOperator<FeatureList<T>> addFeatures, SharedObjects sharedObjects)	Creates session for evaluating features.

Uses of FeatureList in org.anchoranalysis.image.feature.calculator

Methods in org.anchoranalysis.image.feature.calculator with parameters of type FeatureList

Modifier and Type	Method	Description
ResultsVector	SingleTableCalculator.calculate(FeatureInputSingleObject input, FeatureList<FeatureInputSingleObject> featuresSubset)

Uses of FeatureList in org.anchoranalysis.image.feature.calculator.merged

Methods in org.anchoranalysis.image.feature.calculator.merged that return FeatureList

Modifier and Type	Method	Description
FeatureList<FeatureInputStack>	MergedPairsFeatures.getImage()
FeatureList<FeatureInputPairObjects>	MergedPairsFeatures.getPair()
FeatureList<FeatureInputSingleObject>	MergedPairsFeatures.getSingle()

Methods in org.anchoranalysis.image.feature.calculator.merged with parameters of type FeatureList

Modifier and Type	Method	Description
ResultsVector	PairsTableCalculator.calculate(FeatureInputPairObjects input, FeatureList<FeatureInputPairObjects> featuresSubset)

Constructors in org.anchoranalysis.image.feature.calculator.merged with parameters of type FeatureList

Modifier	Constructor	Description
	MergedPairsFeatures(FeatureList<FeatureInputPairObjects> pair)	Creates to only calculate pair features.
	MergedPairsFeatures(FeatureList<FeatureInputStack> image, FeatureList<FeatureInputSingleObject> single, FeatureList<FeatureInputPairObjects> pair)	Creates with features for single, pair and image as a whole.

Uses of FeatureList in org.anchoranalysis.mpp.feature.addcriteria

Methods in org.anchoranalysis.mpp.feature.addcriteria that return types with arguments of type FeatureList

Modifier and Type	Method	Description
Optional<FeatureList<FeatureInputPairMemo>>	AddCriteriaEnergyPair.orderedListOfFeatures()
Optional<FeatureList<FeatureInputPairMemo>>	AddCriteriaNever.orderedListOfFeatures()
Optional<FeatureList<FeatureInputPairMemo>>	AddCriteriaOr.orderedListOfFeatures()
Optional<FeatureList<FeatureInputPairMemo>>	ArbitraryPointCommon.orderedListOfFeatures()
Optional<FeatureList<FeatureInputPairMemo>>	BoundingBoxIntersection.orderedListOfFeatures()
Optional<FeatureList<T>>	OrderedFeatureList.orderedListOfFeatures()	Retrieves an ordered list of features used to determine the AddCriteria.

Constructors in org.anchoranalysis.mpp.feature.addcriteria with parameters of type FeatureList

Modifier	Constructor	Description
	AddCriteriaEnergyPair(FeatureList<FeatureInputPairMemo> energyPairs, AddCriteriaPair pairAddCriteria)	Creates an AddCriteriaEnergyPair with specified energy pairs and add criteria.

Uses of FeatureList in org.anchoranalysis.mpp.feature.energy.scheme

Methods in org.anchoranalysis.mpp.feature.energy.scheme that return FeatureList

Modifier and Type	Method	Description
FeatureList<FeatureInputAllMemo>	EnergyScheme.getAll()	Features for all elements together.
<T extends FeatureInput> FeatureList<T>	EnergyScheme.getElemByCliqueSize(int cliqueSize)	Gets the feature list for a specific clique size.
FeatureList<FeatureInputSingleMemo>	EnergyScheme.getIndividual()	Features for individual elements (clique-size==1).
FeatureList<FeatureInputPairMemo>	EnergyScheme.getPair()	Features for pairs of elements (clique-size==2).

Constructors in org.anchoranalysis.mpp.feature.energy.scheme with parameters of type FeatureList

Modifier	Constructor	Description
	EnergyScheme(FeatureList<FeatureInputSingleMemo> individual, FeatureList<FeatureInputPairMemo> pair, FeatureList<FeatureInputAllMemo> all, RegionMap regionMap, AddCriteriaPair pairAddCriteria)	Creates an energy scheme with the specified features and region map.
	EnergyScheme(FeatureList<FeatureInputSingleMemo> individual, FeatureList<FeatureInputPairMemo> pair, FeatureList<FeatureInputAllMemo> all, RegionMap regionMap, AddCriteriaPair pairAddCriteria, Optional<DictionaryProvider> dictionary, List<NamedBean<Feature<FeatureInputStack>>> listImageFeatures)	Creates an energy scheme with the specified features, region map, and additional options.

Uses of FeatureList in org.anchoranalysis.plugin.image.feature.bean.list

Methods in org.anchoranalysis.plugin.image.feature.bean.list that return FeatureList

Modifier and Type	Method	Description
FeatureList<FeatureInputStack>	IntensityMoments.get()

Uses of FeatureList in org.anchoranalysis.plugin.image.feature.bean.list.pair

Methods in org.anchoranalysis.plugin.image.feature.bean.list.pair that return FeatureList

Modifier and Type	Method	Description
FeatureList<FeatureInputPairObjects>	DeriveFromPair.get()
FeatureList<FeatureInputPairObjects>	FeatureListProviderAggregatePair.get()

Uses of FeatureList in org.anchoranalysis.plugin.image.feature.bean.list.permute

Methods in org.anchoranalysis.plugin.image.feature.bean.list.permute that return FeatureList

Modifier and Type	Method	Description
protected FeatureList<T>	PermuteFeature.createPermutedFeaturesFor(Feature<T> feature)
protected abstract FeatureList<T>	PermuteFeatureBase.createPermutedFeaturesFor(Feature<T> feature)	Creates permuted features for the given feature.
protected FeatureList<T>	PermuteFeatureSequenceInteger.createPermutedFeaturesFor(Feature<T> feature)
FeatureList<T>	PermuteFeatureBase.get()

Uses of FeatureList in org.anchoranalysis.plugin.image.task.bean.feature.source

Methods in org.anchoranalysis.plugin.image.task.bean.feature.source that return types with arguments of type FeatureList

Modifier and Type	Method	Description
FeatureExporter<FeatureList<S>>	SingleRowPerInput.createExporter(LabelHeaders metadataHeaders, List<NamedBean<FeatureListProvider<S>>> features, FeatureOutputNames outputNames, Optional<InputGrouper> grouper, FeatureExporterContext context)

Method parameters in org.anchoranalysis.plugin.image.task.bean.feature.source with type arguments of type FeatureList

Modifier and Type	Method	Description
void	SingleRowPerInput.calculateAndOutput(T input, FeatureCalculationContext<FeatureList<S>> context)
protected ResultsVectorWithThumbnail	FromHistogram.calculateResultsForInput(FileInput input, FeatureCalculationContext<FeatureList<FeatureInputHistogram>> context)
protected ResultsVectorWithThumbnail	FromImage.calculateResultsForInput(ProvidesStackInput input, FeatureCalculationContext<FeatureList<FeatureInputStack>> context)
protected ResultsVectorWithThumbnail	FromImageMetadata.calculateResultsForInput(ImageMetadataInput input, FeatureCalculationContext<FeatureList<FeatureInputImageMetadata>> context)
protected abstract ResultsVectorWithThumbnail	SingleRowPerInput.calculateResultsForInput(T input, FeatureCalculationContext<FeatureList<S>> context)	Calculates feature-results for a particular input.

Uses of FeatureList in org.anchoranalysis.plugin.image.task.feature

Methods in org.anchoranalysis.plugin.image.task.feature that return types with arguments of type FeatureList

Modifier and Type	Method	Description
static <T extends FeatureInput> FeatureExporter<FeatureList<T>>	FeatureExporter.create(List<NamedBean<FeatureListProvider<T>>> features, LabelHeaders metadataHeaders, FeatureOutputNames outputNames, Optional<InputGrouper> grouper, FeatureExporterContext context)	Alternative static constructor that creates a shared-state from a list of named FeatureListProviders.
static <T extends FeatureInput> FeatureExporter<FeatureList<T>>	FeatureExporter.create(NamedFeatureStore<T> featureStore, LabelHeaders metadataHeaders, FeatureOutputNames outputNames, Optional<InputGrouper> grouper, FeatureExporterContext context)	Alternative static constructor that creates a shared-state from a NamedFeatureStore.

Uses of FeatureList in org.anchoranalysis.plugin.image.task.feature.calculator

Methods in org.anchoranalysis.plugin.image.task.feature.calculator with parameters of type FeatureList

Modifier and Type	Method	Description
FeatureCalculatorMulti<T>	FeatureCalculatorFromProvider.calculatorForAll(FeatureList<T> features)	Calculates all image-features in the feature-store.

Uses of FeatureList in org.anchoranalysis.plugin.opencv.bean.feature

Methods in org.anchoranalysis.plugin.opencv.bean.feature that return FeatureList

Modifier and Type	Method	Description
FeatureList<FeatureInputStack>	HOGDescriptor.get()

Uses of FeatureList in org.anchoranalysis.test.feature

Methods in org.anchoranalysis.test.feature that return FeatureList

Modifier and Type	Method	Description
static <T extends FeatureInput> FeatureList<T>	ConstantsInListFixture.create()	Creates a feature-list associated with the fixture.

Uses of FeatureList in org.anchoranalysis.test.feature.plugins

Methods in org.anchoranalysis.test.feature.plugins that return FeatureList

Modifier and Type	Method	Description
static <T extends FeatureInput> FeatureList<T>	FeaturesFromXMLFixture.createFeatureList(String xmlPath, TestLoader loader)	Creates a feature list from an XML file.