Uses of Class
org.anchoranalysis.feature.calculate.part.CalculationPart

Packages that use CalculationPart

Package	Description
org.anchoranalysis.feature.calculate	Sub-feature units of calculation that can be cached.
org.anchoranalysis.feature.calculate.cache	Classes to cache feature-results or parts of feature-results that occur repeatedly among features or across calculations of the same feature.
org.anchoranalysis.feature.calculate.cache.part	Equivalent classes to org.anchoranalysis.feature.calculate.part after having been resolved against a cache.
org.anchoranalysis.feature.calculate.part	A sub-part of the calculation of a feature, that can be cached, and reused by other features.
org.anchoranalysis.feature.session	A defined context in which one or more features are provided inputs and produce results.
org.anchoranalysis.image.feature.calculation	Reusable implementations of CalculationPart related to images.
org.anchoranalysis.mpp.feature.bean.energy.element	Implementations and helper classes for calculating energy during an energy-minimization optimization scheme.
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient	Implementations of FeatureSingleObject that measure an object's gradient from corresponding Channels storing the gradient.
org.anchoranalysis.plugin.image.feature.bean.object.single.morphological	Implementations of FeatureSingleObject that implement morphological operations.
org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting	Implementations of FeatureSingleObject that use SharedObjects for calculations, and measure the degree of intersection between objects.
org.anchoranalysis.plugin.image.feature.bean.object.single.surface	Implementations of FeatureSingleObject that measures aspects of the surface of an ObjectMask.
org.anchoranalysis.plugin.image.feature.bean.stack.object	Implementations of FeatureStack that process an ObjectCollection.
org.anchoranalysis.plugin.image.feature.object.calculation.delegate	Implementations of CalculationPart as used by features elsewhere in this package.
org.anchoranalysis.plugin.image.feature.object.calculation.single	Implementations of CalculationPart that that process a single ObjectMask.
org.anchoranalysis.plugin.image.feature.object.calculation.single.morphological	Implementations of CalculationPart that that process a single ObjectMask - with morphological operations.
org.anchoranalysis.plugin.image.feature.stack.calculation	Implementations of CalculationPart that process Stacks as used by features elsewhere in this package.
org.anchoranalysis.plugin.points.calculate.ellipse	CalculationPart related to fitting ellipses to points by least-squares.
org.anchoranalysis.plugin.points.calculate.ellipsoid	CalculationPart related to fitting ellipsoids to points by least-squares.

Uses of CalculationPart in org.anchoranalysis.feature.calculate

Methods in org.anchoranalysis.feature.calculate with parameters of type CalculationPart

Modifier and Type	Method	Description
<S> S	FeatureCalculationInput.calculate(CalculationPart<S,T> calculation)	Calculates a feature-calculation after resolving it against the main cache.

Uses of CalculationPart in org.anchoranalysis.feature.calculate.cache

Methods in org.anchoranalysis.feature.calculate.cache with parameters of type CalculationPart

Modifier and Type	Method	Description
<S extends FeatureInput> double	CalculateForChild.calculate(Feature<S> feature, CalculationPart<S,T> calculation, ChildCacheName childCacheName)	Calculates a feature in a child-cache using a new input created from a CalculationPart.

Uses of CalculationPart in org.anchoranalysis.feature.calculate.cache.part

Constructors in org.anchoranalysis.feature.calculate.cache.part with parameters of type CalculationPart

Modifier	Constructor	Description
	ResolvedPart(CalculationPart<S,T> calculation)	Creates a new ResolvedPart instance.

Uses of CalculationPart in org.anchoranalysis.feature.calculate.part

Methods in org.anchoranalysis.feature.calculate.part with parameters of type CalculationPart

Modifier and Type	Method	Description
<S> ResolvedPart<S,T>	CalculationPartResolver.search(CalculationPart<S,T> calculation)	Searches for an equivalent calculation to calculation.

Uses of CalculationPart in org.anchoranalysis.feature.session

Methods in org.anchoranalysis.feature.session with parameters of type CalculationPart

Modifier and Type	Method	Description
<S> S	SessionInputSequential.calculate(CalculationPart<S,T> cc)

Uses of CalculationPart in org.anchoranalysis.image.feature.calculation

Subclasses of CalculationPart in org.anchoranalysis.image.feature.calculation

Modifier and Type	Class	Description
class	CalculateInputFromPair	Calculates a single-input from a pair of objects.
class	CalculateNumberVoxels	Calculates the number of voxels in a single object, optionally flattening in the Z-dimension.

Uses of CalculationPart in org.anchoranalysis.mpp.feature.bean.energy.element

Subclasses of CalculationPart in org.anchoranalysis.mpp.feature.bean.energy.element

Modifier and Type	Class	Description
class	CalculateDeriveSingleMemoFromPair	Derives a FeatureInputSingleMemo from a FeatureInputPairMemo.

Uses of CalculationPart in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient that return CalculationPart

Modifier and Type	Method	Description
protected CalculationPart<List<Point3d>,FeatureInputSingleObject>	IntensityGradientBase.gradientCalculation()	Creates a CalculationPart for calculating the gradient from the specified channels.

Uses of CalculationPart in org.anchoranalysis.plugin.image.feature.bean.object.single.morphological

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.morphological that return CalculationPart

Modifier and Type	Method	Description
protected abstract CalculationPart<ObjectMask,FeatureInputSingleObject>	DerivedObject.createCachedCalculationForDerived(CalculationPartResolver<FeatureInputSingleObject> session)	Creates a CalculationPart for deriving the object mask.
protected CalculationPart<ObjectMask,FeatureInputSingleObject>	Erode.createCachedCalculationForDerived(CalculationPartResolver<FeatureInputSingleObject> session)	Creates a CalculationPart for eroding the object mask.
protected CalculationPart<ObjectMask,FeatureInputSingleObject>	Shell.createCachedCalculationForDerived(CalculationPartResolver<FeatureInputSingleObject> session)

Uses of CalculationPart in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting

Subclasses of CalculationPart in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting

Modifier and Type	Class	Description
class	CalculateIntersecting	Calculates a FeatureInputPairObjects from a FeatureInputSingleObject and an intersecting ObjectCollection.

Uses of CalculationPart in org.anchoranalysis.plugin.image.feature.bean.object.single.surface

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.surface that return CalculationPart

Modifier and Type	Method	Description
protected CalculationPart<Integer,FeatureInputSingleObject>	SurfaceNumberVoxelFaces.createParameters(boolean mip, boolean suppress3d)
protected CalculationPart<Integer,FeatureInputSingleObject>	SurfaceNumberVoxels.createParameters(boolean mip, boolean suppress3d)
protected abstract CalculationPart<Integer,FeatureInputSingleObject>	SurfaceNumberVoxelsBase.createParameters(boolean mip, boolean suppress3d)	Creates the calculation parameters for the surface voxel count.

Uses of CalculationPart in org.anchoranalysis.plugin.image.feature.bean.stack.object

Subclasses of CalculationPart in org.anchoranalysis.plugin.image.feature.bean.stack.object

Modifier and Type	Class	Description
class	CalculateDeriveObjectInput	Derives a FeatureInputSingleObject from a FeatureInputStack by extracting an object mask from a specific energy channel.

Uses of CalculationPart in org.anchoranalysis.plugin.image.feature.object.calculation.delegate

Subclasses of CalculationPart in org.anchoranalysis.plugin.image.feature.object.calculation.delegate

Modifier and Type	Class	Description
class	CalculateInputFromDelegate<S,T extends FeatureInput,U>	A base class for CalculationParts that derive from an existing "delegate" calculation.
class	CalculateInputFromDelegateOption<S extends FeatureInput,T extends FeatureInput,U>	Like CalculateInputFromDelegate except assumes optional return value and no parameters.

Methods in org.anchoranalysis.plugin.image.feature.object.calculation.delegate with parameters of type CalculationPart

Modifier and Type	Method	Description
static <S extends FeatureInput, T extends FeatureInput, U> double	CalculateInputFromDelegateOption.calc(FeatureCalculationInput<T> input, CalculationPart<U,T> delegate, Function<ResolvedPart<U,T>,CalculateInputFromDelegateOption<S,T,U>> createFromDelegate, Feature<S> feature, ChildCacheName cacheName, double emptyValue)	Calculates a feature using a cached-calculation as delegate.

Constructors in org.anchoranalysis.plugin.image.feature.object.calculation.delegate with parameters of type CalculationPart

Modifier	Constructor	Description
protected	CalculateInputFromDelegate(CalculationPart<U,T> delegate, CalculationPartResolver<T> cache)	Creates a new CalculateInputFromDelegate.

Uses of CalculationPart in org.anchoranalysis.plugin.image.feature.object.calculation.single

Subclasses of CalculationPart in org.anchoranalysis.plugin.image.feature.object.calculation.single

Modifier and Type	Class	Description
class	CalculateObjectMask	Calculates an ObjectMask based on a specified number of iterations.
class	CalculateShellObjectMask	Calculates a shell ObjectMask by performing dilation and erosion operations.

Methods in org.anchoranalysis.plugin.image.feature.object.calculation.single that return CalculationPart

Modifier and Type	Method	Description
static CalculationPart<ObjectMask,FeatureInputSingleObject>	CalculateShellObjectMask.of(CalculationPartResolver<FeatureInputSingleObject> resolver, MorphologicalIterations iterations, int iterationsErosionSecond, boolean inverse)	Creates a new CalculateShellObjectMask instance.

Uses of CalculationPart in org.anchoranalysis.plugin.image.feature.object.calculation.single.morphological

Subclasses of CalculationPart in org.anchoranalysis.plugin.image.feature.object.calculation.single.morphological

Modifier and Type	Class	Description
class	CalculateDilation	Calculates the dilation of an ObjectMask.
class	CalculateErosion	Calculates the erosion of an ObjectMask.

Methods in org.anchoranalysis.plugin.image.feature.object.calculation.single.morphological that return CalculationPart

Modifier and Type	Method	Description
static CalculationPart<ObjectMask,FeatureInputSingleObject>	CalculateErosion.of(CalculationPartResolver<FeatureInputSingleObject> cache, int iterations, boolean do3D)	Creates a new CalculationPart for calculating erosion.

Uses of CalculationPart in org.anchoranalysis.plugin.image.feature.stack.calculation

Subclasses of CalculationPart in org.anchoranalysis.plugin.image.feature.stack.calculation

Modifier and Type	Class	Description
class	CalculateHistogram	Calculates a Histogram from a specific channel in a FeatureInputStack.
class	CalculateHistogramMasked	Calculated a histogram for a specific region on a channel, as identified by a mask in another channel

Uses of CalculationPart in org.anchoranalysis.plugin.points.calculate.ellipse

Subclasses of CalculationPart in org.anchoranalysis.plugin.points.calculate.ellipse

Modifier and Type	Class	Description
class	CalculateEllipseLeastSquares	Calculates the best-fit ellipse for an ObjectMask using linear least squares.

Uses of CalculationPart in org.anchoranalysis.plugin.points.calculate.ellipsoid

Subclasses of CalculationPart in org.anchoranalysis.plugin.points.calculate.ellipsoid

Modifier and Type	Class	Description
class	CalculateEllipsoidLeastSquares	Calculates the best-fit Ellipsoid for an object using linear least squares.