Package org.anchoranalysis.feature.io.results.group

Class GroupedResults

Object

GroupedResults

public class GroupedResults
extends Object

Stores feature-calculation results, indexing by their group.

Outputs various files pertaining to the grouped-features to the filesystem.

Two categories of outputs occur:

• Aggregate output (a CSV file showing aggregate features for all groups).
• Group outputs (XML and specific CSV files with features only for the group).

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
GroupedResults()

Method Summary

Modifier and Type	Method	Description
void	addResultsFor(LabelledResultsVector results)	Adds a result to the group-writer, but doesn't write yet.
void	writeGroupResults(Optional<NamedFeatureStore<FeatureInputResults>> featuresAggregate, boolean includeGroups, FeatureOutputMetadata outputMetadata, FeatureCSVWriterFactory createAggregatedCSVWriter, InputOutputContextSubdirectoryCache contextGroups)	Writes outputs for groups that have been previously added with addResultsFor(org.anchoranalysis.feature.io.results.LabelledResultsVector).

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

GroupedResults

public GroupedResults()

Method Details

addResultsFor

public void addResultsFor(LabelledResultsVector results)

Adds a result to the group-writer, but doesn't write yet.

Parameters:

results - the results.

writeGroupResults

public void writeGroupResults(Optional<NamedFeatureStore<FeatureInputResults>> featuresAggregate,
 boolean includeGroups,
 FeatureOutputMetadata outputMetadata,
 FeatureCSVWriterFactory createAggregatedCSVWriter,
 InputOutputContextSubdirectoryCache contextGroups)
                       throws OutputWriteFailedException

Writes outputs for groups that have been previously added with addResultsFor(org.anchoranalysis.feature.io.results.LabelledResultsVector).

Parameters:

featuresAggregate - features for aggregating existing results-calculations, if enabled.

includeGroups - whether to output "groups".

outputMetadata - additional information needed for the outputs in LabelledResultsCollector.

createAggregatedCSVWriter - creating a CSVWriter for the aggregated outputs.

contextGroups - input-output context for the group outputs.

Throws:

OutputWriteFailedException - if any Writing fails.