Package org.anchoranalysis.image.bean.segment.binary

Class BinarySegmentationReference

Object

AnchorBean<BinarySegmentation>

InitializableBean<BinarySegmentation,ImageInitialization>

ImageBean<BinarySegmentation>

SegmentationBean<BinarySegmentation>

BinarySegmentation

BinarySegmentationReference

public class BinarySegmentationReference
extends BinarySegmentation

Uses an existing BinarySegmentation that is located by a unique identifier.

The identifier locates an entity from the shared-objects passed during initialization in the ImageInitialization.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
BinarySegmentationReference()

Method Summary

Modifier and Type	Method	Description
String	getId()	The identifier of the existing BinarySegmentation to use.
void	onInitialization(ImageInitialization initialization)	Called after initialization.
BinaryVoxels<UnsignedByteBuffer>	segment(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask)	Performs a segmentation on voxels so that each voxel has an on or off state after the operation.
void	setId(String id)	The identifier of the existing BinarySegmentation to use.

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

BinarySegmentationReference

public BinarySegmentationReference()

Method Details

onInitialization

public void onInitialization(ImageInitialization initialization)
                      throws InitializeException

Description copied from class: InitializableBean

Called after initialization. An empty implementation is provided, to be overridden as needed in the sub-classes.

Overrides:

onInitialization in class InitializableBean<BinarySegmentation,ImageInitialization>

Parameters:

initialization - parameters used for initialization.

Throws:

InitializeException - if initialization does not successfully complete.

segment

public BinaryVoxels<UnsignedByteBuffer> segment(VoxelsUntyped voxels,
 BinarySegmentationParameters parameters,
 Optional<ObjectMask> objectMask)
                                         throws SegmentationFailedException

Description copied from class: BinarySegmentation

Performs a segmentation on voxels so that each voxel has an on or off state after the operation.

Specified by:

segment in class BinarySegmentation

Parameters:

voxels - voxels to segment.

parameters - parameters to guide the algorithm.

objectMask - if present, segmentation only occurs inside this object.

Returns:

voxels for a mask on the input-buffer, which may be newly-created, or may reuse the input voxels, depending on implementation.

Throws:

SegmentationFailedException - if the segmentation cannot be successfully completed.

getId

public String getId()

The identifier of the existing BinarySegmentation to use.

setId

public void setId(String id)

The identifier of the existing BinarySegmentation to use.