Uses of Package
org.anchoranalysis.image.core.channel

Packages that use org.anchoranalysis.image.core.channel
Package
Description
org.anchoranalysis.feature.energy
A particular stack used in feature-calculations called a EnergyStack together with related classes.
org.anchoranalysis.image.bean.channel
Base classes for performing operations on Channels.
org.anchoranalysis.image.bean.displayer
 
org.anchoranalysis.image.bean.nonbean
Classes that are used elsewhere in this package but which aren't themselves AnchorBeans.
org.anchoranalysis.image.bean.nonbean.init
Classes that aren't AnchorBeans that pertain to the initialization of image-related beans.
org.anchoranalysis.image.bean.provider
Base classes for providers of different core data entities related to images.
org.anchoranalysis.image.bean.segment.object
Base classes to segment a channel into objects.
org.anchoranalysis.image.core.channel
The Channel core data-class and related operations and converters.
org.anchoranalysis.image.core.channel.convert
Converts a channel to other data-types.
org.anchoranalysis.image.core.channel.convert.attached
Converts a channel to another data-type based upon another object to which it is attached.
org.anchoranalysis.image.core.channel.convert.attached.channel
Converts a channel to another data-type based upon a Channel to which it is attached.
org.anchoranalysis.image.core.channel.convert.attached.histogram
Converts a channel to another data-type based upon a Histogram to which it is attached.
org.anchoranalysis.image.core.channel.factory
Factory classes for creating Channel for various voxel data-types.
org.anchoranalysis.image.core.mask
An image with only two permissible states.
org.anchoranalysis.image.core.object
The key data entity org.anchoranalysis.image.voxel.object and related-classes and operations.
org.anchoranalysis.image.core.object.label
Labelling elements (object-masks or similar) with unique successive integers in a channel.
org.anchoranalysis.image.core.stack
Defines the key data object, Stack, and related classes.
org.anchoranalysis.image.io.channel.input
Non-bean classes for reading a Channel from the filesystem.
org.anchoranalysis.image.io.channel.map
Non-bean classes for a mapping of names to Channels.
org.anchoranalysis.image.io.channel.output
Non-bean classes for writing a Channel to the filesystem.
org.anchoranalysis.io.bioformats
Non-bean classes for filesystem I/O using Bioformats.
org.anchoranalysis.io.bioformats.copyconvert
Converts the byte stream opened by Bioformats into channels of particular data-type.
org.anchoranalysis.io.imagej.convert
Converts to and from ImageJ data-structures for images.
org.anchoranalysis.plugin.fiji.bean.channel.provider
Implementations of ChannelProvider that use FIJI.
org.anchoranalysis.plugin.fiji.bean.channel.provider.distance
Euclidean Distance Transform implementations via FIJI.
org.anchoranalysis.plugin.fiji.bean.mask.provider
Implementations of MaskProvider that use FIJI.
org.anchoranalysis.plugin.image.bean.channel.aggregator
Implementations of ConvertChannelTo and ConvertChannelToWithHistogram.
org.anchoranalysis.plugin.image.bean.channel.provider
Implementations of ChannelProvider that are generic base-classes or otherwise abstract or general.
org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic
Implementations of ChannelProvider that perform arithmetic on voxels in one or more Channels.
org.anchoranalysis.plugin.image.bean.channel.provider.assign
Implementations of ChannelProvider that sets the values of the voxels in a Channel.
org.anchoranalysis.plugin.image.bean.channel.provider.convert
Implementations of ChannelProvider that converts a Channel from one voxel-type to another.
org.anchoranalysis.plugin.image.bean.channel.provider.gradient
Implementations of ChannelProvider that calculate the gradient of a Channel's voxels in one or more dimensions.
org.anchoranalysis.plugin.image.bean.channel.provider.intensity
Implementations of ChannelProvider that manipulate the intensity-values of the voxels of a Channel's voxels.
org.anchoranalysis.plugin.image.bean.channel.provider.mask
Implementations of ChannelProvider that involve conversion from or application of Masks.
org.anchoranalysis.plugin.image.bean.channel.provider.object
Implementations of ChannelProvider that involve conversion from or application of ObjectMasks.
org.anchoranalysis.plugin.image.bean.channel.provider.score
Implementations of ChannelProvider that assign a score to particular subregions of a channel.
org.anchoranalysis.plugin.image.bean.channel.provider.slice
Implementations of ChannelProvider that process 3D channels slice-by-slice.
org.anchoranalysis.plugin.image.bean.mask.provider
Implementations of MaskProvider.
org.anchoranalysis.plugin.image.bean.mask.provider.convert
Implementations of MaskProvider that convert providers of other types to ObjectMasks.
org.anchoranalysis.plugin.image.bean.mask.provider.segment
Implementations of MaskProvider where an ObjectCollection is created by segmenting a Channel.
org.anchoranalysis.plugin.image.bean.object.provider
Implementations of ObjectCollectionProvider.
org.anchoranalysis.plugin.image.bean.object.provider.segment
Implementations of ObjectCollectionProvider involving segmentation.
org.anchoranalysis.plugin.image.bean.object.segment.channel
Implementations of SegmentChannelIntoObjects.
org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.minima
Minima imposition for a Watershed transformation.
org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong
Implementation of a Watershed transformation based on Yeong et al. 2009.
org.anchoranalysis.plugin.image.bean.stack.provider.color
Implementations of StackProvider that color portions of an image.
org.anchoranalysis.plugin.image.channel
Non-beans for operations or calculations relating to Channels.
org.anchoranalysis.plugin.image.feature.bean.object.single.energy
Implementations of FeatureSingleObject that reference a particular Channel in the associated EnergyStack.
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity
Implementations of FeatureSingleObject that measure an object's intensity on a corresponding Channel.
org.anchoranalysis.plugin.image.intensity
Non-bean for operations or calculations relating to intensity.
org.anchoranalysis.plugin.image.intensity.level
Non-beans for calculating a thresholding level from itensity values.
org.anchoranalysis.plugin.image.task.bean.combine
Combining multiple images together into a single image.
org.anchoranalysis.plugin.image.task.bean.grouped
Tasks that involved stacks (usually each channel from an image) that are somehow grouped-together.
org.anchoranalysis.plugin.image.task.bean.grouped.histogram
Task(s) to export histograms of intensity values.
org.anchoranalysis.plugin.image.task.channel.aggregator
Combines multiple Channels voxel-wise to form a single aggregated Channel.
org.anchoranalysis.plugin.image.task.grouped
Non-bean classes about grouping channels or other inputs.
org.anchoranalysis.plugin.image.task.stack
Non-bean classes pertaining to stacks and channels as used in tasks.
org.anchoranalysis.plugin.imagej.bean.channel.provider
Implementations of ChannelProvider that call ImageJ.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter
Filters using ImageJ.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank
Non-linear filters using ImageJ that use the statistical rank of the intensity values in the kernel.
org.anchoranalysis.plugin.imagej.bean.object.segment
Implementations of ObjectCollectionProvider that call ImageJ to perform segmentation.
org.anchoranalysis.plugin.imagej.channel.provider
Implementations of ChannelProvider that call ImageJ.
org.anchoranalysis.test.image
Testing utilities and fixtures with no greater downstream dependency than anchor-image-io or anchor-io-bioformats or anchor-imagej.
org.anchoranalysis.test.image.io
Utilities for testing-related reading and writing to the filesystem.