Uses of Class
org.anchoranalysis.image.core.stack.DisplayStack

Packages that use DisplayStack

Package	Description
org.anchoranalysis.annotation.io.assignment.generator	Generates output images to illustrate a Assignment between annotations.
org.anchoranalysis.annotation.io.bean.comparer	What to compare an annotation (ground truth) against?
org.anchoranalysis.image.bean.displayer
org.anchoranalysis.image.core.stack	Defines the key data object, Stack, and related classes.
org.anchoranalysis.image.inference.segment	Non-beans pertaining to segmentation of images via model inference.
org.anchoranalysis.image.io.object.output.rgb	Writing an ObjectCollection to the filesystem as RGB raster-images.
org.anchoranalysis.image.io.stack	Non-bean classes for reading / writing a Stack from and to the filesystem.
org.anchoranalysis.image.io.stack.output.box	Base classes for generators that ultimately write only a bounding-box portion of a Stack to the filesystem.
org.anchoranalysis.image.io.stack.output.generator	Base classes for generators that ultimately write a Stack to the filesystem.
org.anchoranalysis.mpp.io.output	Non-beans for writing data structures related to marked point processes from the file system.
org.anchoranalysis.plugin.image.bean.thumbnail.stack	Implementations of ThumbnailFromStack.
org.anchoranalysis.plugin.image.task.feature	Non-bean classes pertaining to Features as used in tasks.
org.anchoranalysis.plugin.image.thumbnail	Non-bean classes for thumbnail creation.
org.anchoranalysis.test.image	Testing utilities and fixtures with no greater downstream dependency than anchor-image-io or anchor-io-bioformats or anchor-imagej.

Uses of DisplayStack in org.anchoranalysis.annotation.io.assignment.generator

Constructors in org.anchoranalysis.annotation.io.assignment.generator with parameters of type DisplayStack

Modifier	Constructor	Description
	DrawColoredObjects(DisplayStack background, boolean flatten, int outlineWidth)	Creates a new DrawColoredObjects instance.

Uses of DisplayStack in org.anchoranalysis.annotation.io.bean.comparer

Methods in org.anchoranalysis.annotation.io.bean.comparer with parameters of type DisplayStack

Modifier and Type	Method	Description
List<NameValue<Stack>>	MultipleComparer.createComparisonStacks(AnnotationWithMarks annotation, DisplayStack background, Path annotationPath, ColorScheme colorScheme, Path modelDirectory, OperationContext context, boolean debugMode)	Creates a Stack illustrating the comparison between annotation and each source in sources.

Uses of DisplayStack in org.anchoranalysis.image.bean.displayer

Methods in org.anchoranalysis.image.bean.displayer that return DisplayStack

Modifier and Type	Method	Description
DisplayStack	StackDisplayer.deriveFrom(Channel channel)	Creates from a Channel.
DisplayStack	StackDisplayer.deriveFrom(RGBStack rgbStack)	Derives a DisplayStack from a RGBStack.
DisplayStack	StackDisplayer.deriveFrom(Stack stack)	Derives a DisplayStack from a RGBStack.

Uses of DisplayStack in org.anchoranalysis.image.core.stack

Methods in org.anchoranalysis.image.core.stack that return DisplayStack

Modifier and Type	Method	Description
DisplayStack	DisplayStack.extractSlice(int z)	Extract a particular z-slice from the DisplayStack as a new stack, applying any applicable conversion.
DisplayStack	DisplayStack.projectMax()	Creates a Maximum Intensity Projection of each channel.

Uses of DisplayStack in org.anchoranalysis.image.inference.segment

Methods in org.anchoranalysis.image.inference.segment that return DisplayStack

Modifier and Type	Method	Description
DisplayStack	SegmentedObjectsAtScale.backgroundDisplayStack()	Like SegmentedObjectsAtScale.background() but instead creates a DisplayStack.

Uses of DisplayStack in org.anchoranalysis.image.io.object.output.rgb

Methods in org.anchoranalysis.image.io.object.output.rgb that return types with arguments of type DisplayStack

Modifier and Type	Method	Description
io.vavr.control.Either<Dimensions,DisplayStack>	ObjectsAsRGBGenerator.getBackground()	A background image or dimensions to define an empty background.

Methods in org.anchoranalysis.image.io.object.output.rgb with parameters of type DisplayStack

Modifier and Type	Method	Description
static DrawObjectsGenerator	DrawObjectsGenerator.outlineSingleColor(int outlineWidth, DisplayStack background, RGBColor color)	Creates a generator that draws an outline around objects on a background using a single color for all objects.
static DrawObjectsGenerator	DrawObjectsGenerator.outlineVariedColors(int numberColors, int outlineWidth, DisplayStack background)	Creates a generator that draws an outline around objects on a background using varied colors for the objects.
static DrawObjectsGenerator	DrawObjectsGenerator.withBackgroundAndColors(DrawObject drawObject, DisplayStack background, ColorIndex colorIndex)	Creates a generator that draws an object in a particular way with particular colors and background.

Method parameters in org.anchoranalysis.image.io.object.output.rgb with type arguments of type DisplayStack

Modifier and Type	Method	Description
protected RGBStack	DrawCroppedObjectsGenerator.generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background)
protected RGBStack	DrawObjectsGenerator.generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background)
protected abstract RGBStack	ObjectsAsRGBGenerator.generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background)	Creates a RGBStack containing the background, without objects being drawn upon it.
static DrawObjectsGenerator	DrawObjectsGenerator.outlineVariedColors(int numberColors, int outlineWidth, io.vavr.control.Either<Dimensions,DisplayStack> background)	Creates a generator that draws an outline around objects on a background using varied colors for the objects.
void	ObjectsAsRGBGenerator.setBackground(io.vavr.control.Either<Dimensions,DisplayStack> background)	A background image or dimensions to define an empty background.

Constructors in org.anchoranalysis.image.io.object.output.rgb with parameters of type DisplayStack

Modifier	Constructor	Description
	DrawCroppedObjectsGenerator(DrawObject drawObject, DisplayStack background, Padding padding, ColorIndex colors)	Create with a particular background and method for drawing-objects.

Constructor parameters in org.anchoranalysis.image.io.object.output.rgb with type arguments of type DisplayStack

Modifier	Constructor	Description
	ObjectsAsRGBGenerator(DrawObject drawObject, ObjectDrawAttributes attributes, io.vavr.control.Either<Dimensions,DisplayStack> background)	Creates a new ObjectsAsRGBGenerator instance.

Uses of DisplayStack in org.anchoranalysis.image.io.stack

Methods in org.anchoranalysis.image.io.stack with parameters of type DisplayStack

Modifier and Type	Method	Description
static RGBStack	ConvertStackToRGB.convert(DisplayStack stack, boolean alwaysNew)	Converts all of a DisplayStack to a RGBStack.
static RGBStack	ConvertStackToRGB.convertCropped(DisplayStack stack, BoundingBox box)	Converts a bounding-box region in DisplayStack to a RGBStack.

Uses of DisplayStack in org.anchoranalysis.image.io.stack.output.box

Methods in org.anchoranalysis.image.io.stack.output.box with parameters of type DisplayStack

Modifier and Type	Method	Description
static ScaleableBackground	ScaleableBackground.noScaling(DisplayStack stack)	Creates a background from a stack without any scaling.
static ScaleableBackground	ScaleableBackground.scaleBy(DisplayStack stack, ScaleFactor scaleFactor, VoxelsResizer resizer)	Creates a background from a stack with scaling.

Uses of DisplayStack in org.anchoranalysis.image.io.stack.output.generator

Methods in org.anchoranalysis.image.io.stack.output.generator with parameters of type DisplayStack

Modifier and Type	Method	Description
protected Stack	DisplayStackGenerator.convertBeforeAssign(DisplayStack element)

Constructor parameters in org.anchoranalysis.image.io.stack.output.generator with type arguments of type DisplayStack

Modifier	Constructor	Description
	RasterGeneratorDelegateToDisplayStack(SingleFileTypeGenerator<T,DisplayStack> delegate, boolean rgb)	Creates a new RasterGeneratorDelegateToDisplayStack instance.

Uses of DisplayStack in org.anchoranalysis.mpp.io.output

Methods in org.anchoranalysis.mpp.io.output that return DisplayStack

Modifier and Type	Method	Description
static DisplayStack	BackgroundCreator.createBackground(NamedProviderStore<Stack> stackCollection, String backgroundStackName, StackDisplayer displayer)	Creates a background DisplayStack from a named stack in a collection.

Uses of DisplayStack in org.anchoranalysis.plugin.image.bean.thumbnail.stack

Methods in org.anchoranalysis.plugin.image.bean.thumbnail.stack that return DisplayStack

Modifier and Type	Method	Description
DisplayStack	ScaleToSize.thumbnailFor(Stack stack)
abstract DisplayStack	ThumbnailFromStack.thumbnailFor(Stack stack)	Creates a thumbnail for a stack.

Uses of DisplayStack in org.anchoranalysis.plugin.image.task.feature

Methods in org.anchoranalysis.plugin.image.task.feature that return types with arguments of type DisplayStack

Modifier and Type	Method	Description
CheckedSupplier<Optional<DisplayStack>,OperationFailedException>	ResultsVectorWithThumbnail.getThumbnail()	Supplier for the optional thumbnail DisplayStack.

Uses of DisplayStack in org.anchoranalysis.plugin.image.thumbnail

Methods in org.anchoranalysis.plugin.image.thumbnail that return DisplayStack

Modifier and Type	Method	Description
DisplayStack	ThumbnailBatch.thumbnailFor(T element)	Creates a thumbnail for an element in the batch.

Uses of DisplayStack in org.anchoranalysis.test.image

Methods in org.anchoranalysis.test.image with parameters of type DisplayStack

Modifier and Type	Method	Description
void	WriteIntoDirectory.writeStack(String outputName, DisplayStack stack)	Writes a DisplayStack to the output directory.

Method parameters in org.anchoranalysis.test.image with type arguments of type DisplayStack

Modifier and Type	Method	Description
void	WriteIntoDirectory.writeList(String outputName, List<DisplayStack> stacks, boolean always2D)	Writes a list of display-stacks.