Uses of Class
org.anchoranalysis.image.feature.input.FeatureInputPairObjects

Packages that use FeatureInputPairObjects

Package	Description
org.anchoranalysis.annotation.io.assignment	A pairing of objects from two collections (bipartite matching).
org.anchoranalysis.annotation.io.bean.comparer	What to compare an annotation (ground truth) against?
org.anchoranalysis.image.feature.bean.object.pair	Features that operate on a pair of ObjectMasks.
org.anchoranalysis.image.feature.calculation	Reusable implementations of CalculationPart related to images.
org.anchoranalysis.image.feature.calculator.merged	A particular implementation of FeatureCalculatorMulti for feature-calculations based upon pairs of image-objects.
org.anchoranalysis.image.feature.input	Image-related implementations of FeatureInput.
org.anchoranalysis.plugin.annotation.bean.comparison.assigner	Pairs annotations from two different sets, creating an assignment of some type.
org.anchoranalysis.plugin.image.bean.object.provider.merge	Implementations of ObjectCollectionProvider involving merging objects together.
org.anchoranalysis.plugin.image.feature.bean.list.pair	Implementations of FeatureListProvider with input-type FeatureInputPairObjects.
org.anchoranalysis.plugin.image.feature.bean.object.combine	Features from combinations of ObjectMasks.
org.anchoranalysis.plugin.image.feature.bean.object.pair	Features from pairs of ObjectMasks.
org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap	Features that calculate the degree of overlap between two ObjectMasks.
org.anchoranalysis.plugin.image.feature.bean.object.pair.touching	Features that calculate how many other objects an ObjectMask directly neighbors.
org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting	Implementations of FeatureSingleObject that use SharedObjects for calculations, and measure the degree of intersection between objects.
org.anchoranalysis.plugin.image.object.merge.priority	Assigning priority when merging ObjectMasks.
org.anchoranalysis.test.feature.plugins.objects	Fixtures for creating object-masks and related feature-inputs.

Uses of FeatureInputPairObjects in org.anchoranalysis.annotation.io.assignment

Constructor parameters in org.anchoranalysis.annotation.io.assignment with type arguments of type FeatureInputPairObjects

Modifier	Constructor	Description
	AssignOverlappingObjects(FeatureEvaluator<FeatureInputPairObjects> featureEvaluator, boolean flatten)	Creates a new AssignOverlappingObjects instance.

Uses of FeatureInputPairObjects in org.anchoranalysis.annotation.io.bean.comparer

Methods in org.anchoranalysis.annotation.io.bean.comparer that return types with arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
FeatureEvaluator<FeatureInputPairObjects>	MultipleComparer.getFeatureEvaluator()	Calculates the cost used when making assignments.

Method parameters in org.anchoranalysis.annotation.io.bean.comparer with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
void	MultipleComparer.setFeatureEvaluator(FeatureEvaluator<FeatureInputPairObjects> featureEvaluator)	Calculates the cost used when making assignments.

Uses of FeatureInputPairObjects in org.anchoranalysis.image.feature.bean.object.pair

Method parameters in org.anchoranalysis.image.feature.bean.object.pair with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
double	First.calculate(FeatureCalculationInput<FeatureInputPairObjects> input)
double	Merged.calculate(FeatureCalculationInput<FeatureInputPairObjects> input)
double	Minimum.calculate(FeatureCalculationInput<FeatureInputPairObjects> input)
double	RatioFirstToSecond.calculate(FeatureCalculationInput<FeatureInputPairObjects> input)
double	Second.calculate(FeatureCalculationInput<FeatureInputPairObjects> input)
double	SubtractSecondFromFirst.calculate(FeatureCalculationInput<FeatureInputPairObjects> input)
protected double	FeatureDeriveFromPair.valueFromFirst(FeatureCalculationInput<FeatureInputPairObjects> input)	Calculates the feature value for the first object in the pair.
protected double	FeatureDeriveFromPair.valueFromMerged(FeatureCalculationInput<FeatureInputPairObjects> input)	Calculates the feature value for the merged object from the pair.
protected double	FeatureDeriveFromPair.valueFromSecond(FeatureCalculationInput<FeatureInputPairObjects> input)	Calculates the feature value for the second object in the pair.

Uses of FeatureInputPairObjects in org.anchoranalysis.image.feature.calculation

Methods in org.anchoranalysis.image.feature.calculation with parameters of type FeatureInputPairObjects

Modifier and Type	Method	Description
protected FeatureInputSingleObject	CalculateInputFromPair.execute(FeatureInputPairObjects input)	Executes the calculation to extract a single object from the pair.

Uses of FeatureInputPairObjects in org.anchoranalysis.image.feature.calculator.merged

Methods in org.anchoranalysis.image.feature.calculator.merged that return types with arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
FeatureCalculatorMulti<FeatureInputPairObjects>	MergedPairsFeatures.createPair(CreateCalculatorHelper calculatorCreator, ImageInitialization initialization, CacheTransferSourceCollection cacheTransferSource)	Creates a feature calculator for pair object features.
FeatureTableCalculator<FeatureInputPairObjects>	PairsTableCalculator.duplicateForNewThread()
FeatureList<FeatureInputPairObjects>	MergedPairsFeatures.getPair()

Methods in org.anchoranalysis.image.feature.calculator.merged with parameters of type FeatureInputPairObjects

Modifier and Type	Method	Description
ResultsVector	PairsTableCalculator.calculate(FeatureInputPairObjects input)
ResultsVector	PairsTableCalculator.calculate(FeatureInputPairObjects input, FeatureList<FeatureInputPairObjects> featuresSubset)
ResultsVector	PairsTableCalculator.calculateMaybeSuppressErrors(FeatureInputPairObjects input, ErrorReporter errorReporter)	Calculates features for the input, optionally suppressing errors.
ResultsVector	PairsTableCalculator.calculateSuppressErrors(FeatureInputPairObjects input, ErrorReporter errorReporter)

Method parameters in org.anchoranalysis.image.feature.calculator.merged with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
ResultsVector	PairsTableCalculator.calculate(FeatureInputPairObjects input, FeatureList<FeatureInputPairObjects> featuresSubset)

Constructor parameters in org.anchoranalysis.image.feature.calculator.merged with type arguments of type FeatureInputPairObjects

Modifier	Constructor	Description
	MergedPairsFeatures(FeatureList<FeatureInputPairObjects> pair)	Creates to only calculate pair features.

Uses of FeatureInputPairObjects in org.anchoranalysis.image.feature.input

Constructors in org.anchoranalysis.image.feature.input with parameters of type FeatureInputPairObjects

Modifier	Constructor	Description
protected	FeatureInputPairObjects(FeatureInputPairObjects src)	Copy constructor for FeatureInputPairObjects.

Uses of FeatureInputPairObjects in org.anchoranalysis.plugin.annotation.bean.comparison.assigner

Methods in org.anchoranalysis.plugin.annotation.bean.comparison.assigner that return types with arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
FeatureEvaluator<FeatureInputPairObjects>	FeatureCostAssigner.getFeatureEvaluator()

Method parameters in org.anchoranalysis.plugin.annotation.bean.comparison.assigner with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
void	FeatureCostAssigner.setFeatureEvaluator(FeatureEvaluator<FeatureInputPairObjects> featureEvaluator)

Uses of FeatureInputPairObjects in org.anchoranalysis.plugin.image.bean.object.provider.merge

Methods in org.anchoranalysis.plugin.image.bean.object.provider.merge that return types with arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
FeatureEvaluator<FeatureInputPairObjects>	MergePairs.getFeatureEvaluatorMerge()

Method parameters in org.anchoranalysis.plugin.image.bean.object.provider.merge with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
void	MergePairs.setFeatureEvaluatorMerge(FeatureEvaluator<FeatureInputPairObjects> featureEvaluatorMerge)

Uses of FeatureInputPairObjects in org.anchoranalysis.plugin.image.feature.bean.list.pair

Methods in org.anchoranalysis.plugin.image.feature.bean.list.pair that return types with arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
protected abstract Feature<FeatureInputPairObjects>	FeatureListProviderAggregatePair.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)	Creates an aggregate feature from individual features for first, second, and merged objects.
protected Feature<FeatureInputPairObjects>	ReduceFirstAndSecond.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected Feature<FeatureInputPairObjects>	ReduceRatioFirstAndSecond.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected Feature<FeatureInputPairObjects>	SubtractReducedFromMerged.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected FeatureFromList<FeatureInputPairObjects>	FeatureListProviderAggregatePair.createReducedFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second)	Creates a reduced feature from features for the first and second objects.
FeatureList<FeatureInputPairObjects>	DeriveFromPair.get()
FeatureList<FeatureInputPairObjects>	FeatureListProviderAggregatePair.get()
FeatureFromList<FeatureInputPairObjects>	FeatureListProviderAggregatePair.getReduce()	Method for reducing all pairs into a single value e.g.

Method parameters in org.anchoranalysis.plugin.image.feature.bean.list.pair with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
protected abstract Feature<FeatureInputPairObjects>	FeatureListProviderAggregatePair.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)	Creates an aggregate feature from individual features for first, second, and merged objects.
protected Feature<FeatureInputPairObjects>	ReduceFirstAndSecond.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected Feature<FeatureInputPairObjects>	ReduceRatioFirstAndSecond.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected Feature<FeatureInputPairObjects>	SubtractReducedFromMerged.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected FeatureFromList<FeatureInputPairObjects>	FeatureListProviderAggregatePair.createReducedFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second)	Creates a reduced feature from features for the first and second objects.
void	FeatureListProviderAggregatePair.setReduce(FeatureFromList<FeatureInputPairObjects> reduce)	Method for reducing all pairs into a single value e.g.

Uses of FeatureInputPairObjects in org.anchoranalysis.plugin.image.feature.bean.object.combine

Methods in org.anchoranalysis.plugin.image.feature.bean.object.combine that return types with arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
FeatureTableCalculator<FeatureInputPairObjects>	PairNeighbors.createFeatures(List<NamedBean<FeatureListProvider<FeatureInputSingleObject>>> list, NamedFeatureStoreFactory storeFactory, boolean suppressErrors)
List<NamedBean<FeatureListProvider<FeatureInputPairObjects>>>	PairNeighbors.getFeaturesPair()	Additional features that are processed on the pair of images (i.e.
List<FeatureInputPairObjects>	PairNeighbors.startBatchDeriveInputs(ObjectCollection objects, EnergyStack energyStack, Logger logger)

Methods in org.anchoranalysis.plugin.image.feature.bean.object.combine with parameters of type FeatureInputPairObjects

Modifier and Type	Method	Description
protected BoundingBox	PairNeighbors.boundingBoxThatSpansInput(FeatureInputPairObjects input)
ObjectCollection	PairNeighbors.objectsForThumbnail(FeatureInputPairObjects input)
String	PairNeighbors.uniqueIdentifierFor(FeatureInputPairObjects input)

Method parameters in org.anchoranalysis.plugin.image.feature.bean.object.combine with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
void	PairNeighbors.setFeaturesPair(List<NamedBean<FeatureListProvider<FeatureInputPairObjects>>> featuresPair)	Additional features that are processed on the pair of images (i.e.

Uses of FeatureInputPairObjects in org.anchoranalysis.plugin.image.feature.bean.object.pair

Method parameters in org.anchoranalysis.plugin.image.feature.bean.object.pair with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
double	Intersection.calculate(FeatureCalculationInput<FeatureInputPairObjects> input)

Uses of FeatureInputPairObjects in org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap

Methods in org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap with parameters of type FeatureInputPairObjects

Modifier and Type	Method	Description
protected abstract int	OverlapRelative.calculateDenominator(FeatureInputPairObjects input)	Calculates the denominator for the overlap ratio.
protected int	OverlapRelativeToFirst.calculateDenominator(FeatureInputPairObjects input)
protected int	OverlapRelativeToMaxVolume.calculateDenominator(FeatureInputPairObjects input)
protected int	OverlapRelativeToMerged.calculateDenominator(FeatureInputPairObjects input)
protected int	OverlapRelativeToSecond.calculateDenominator(FeatureInputPairObjects input)

Method parameters in org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
double	CostOverlapWithinMidpointDistance.calculate(FeatureCalculationInput<FeatureInputPairObjects> input)
double	OverlapRelative.calculate(FeatureCalculationInput<FeatureInputPairObjects> input)

Uses of FeatureInputPairObjects in org.anchoranalysis.plugin.image.feature.bean.object.pair.touching

Method parameters in org.anchoranalysis.plugin.image.feature.bean.object.pair.touching with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
double	TouchingVoxels.calculate(FeatureCalculationInput<FeatureInputPairObjects> input)

Uses of FeatureInputPairObjects in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting that return FeatureInputPairObjects

Modifier and Type	Method	Description
protected FeatureInputPairObjects	CalculateIntersecting.deriveFromDelegate(FeatureInputSingleObject input, ObjectCollection delegate)

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting that return types with arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
Feature<FeatureInputPairObjects>	FeatureIntersectingObjectsSingleElement.getItem()	The feature to calculate for each intersecting object pair.

Method parameters in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting with type arguments of type FeatureInputPairObjects

Modifier and Type	Method	Description
void	FeatureIntersectingObjectsSingleElement.setItem(Feature<FeatureInputPairObjects> item)	The feature to calculate for each intersecting object pair.

Uses of FeatureInputPairObjects in org.anchoranalysis.plugin.image.object.merge.priority

Constructor parameters in org.anchoranalysis.plugin.image.object.merge.priority with type arguments of type FeatureInputPairObjects

Modifier	Constructor	Description
	AssignPriorityFromPair(FeatureCalculatorSingle<FeatureInputPairObjects> featureCalculator, double threshold, DoubleBiPredicate relation)

Uses of FeatureInputPairObjects in org.anchoranalysis.test.feature.plugins.objects

Methods in org.anchoranalysis.test.feature.plugins.objects that return FeatureInputPairObjects

Modifier and Type	Method	Description
static FeatureInputPairObjects	FeatureInputOverlappingCircleFixture.twoNonOverlappingCircles(boolean sameSize)	Creates two object-masks of circles in different locations WITHOUT any overlap.
static FeatureInputPairObjects	FeatureInputOverlappingCircleFixture.twoOverlappingCircles(boolean sameSize)	Creates two object-masks of circles in different locations WITH some overlap.