Package org.anchoranalysis.image.io.stack.input

Interface StackSequenceInput

All Superinterfaces:

InputFromManager, ProvidesStackInput

All Known Implementing Classes:

ConvertNamedChannelsInputToStack

public interface StackSequenceInput
extends ProvidesStackInput

Provides a single stack (or a time series of such stacks) as an input

Author:

Owen Feehan

Method Summary

Modifier and Type	Method	Description
TimeSeries	createStackSequenceForSeries(int seriesIndex, Logger logger)	Creates a supplier of a TimeSeries of stacks for a particular series number.

Methods inherited from interface org.anchoranalysis.io.input.InputFromManager

allAssociatedPaths, asFile, close, identifier, identifierAsPath, pathForBinding, pathForBindingRequired

Methods inherited from interface org.anchoranalysis.image.io.stack.input.ProvidesStackInput

addToStoreInferNames, addToStoreInferNames, addToStoreWithName, asSet, asStack, numberFrames

Method Details

createStackSequenceForSeries

TimeSeries createStackSequenceForSeries(int seriesIndex,
 Logger logger)
                                 throws ImageIOException

Creates a supplier of a TimeSeries of stacks for a particular series number.

Parameters:

seriesIndex - the index.

logger - a logger for any non-fatal errors. Fatal errors throw an exception.

Returns:

a newly created TimeSeries of Stacks.

Throws:

ImageIOException - if any stack could not be successfully read.