Uses of Class
org.anchoranalysis.image.voxel.buffer.primitive.UnsignedIntBuffer

Packages that use UnsignedIntBuffer

Package	Description
org.anchoranalysis.image.voxel	Data-structures to store and manipulate image raster-data or voxels.
org.anchoranalysis.image.voxel.arithmetic	Arithmetic operations for Voxels.
org.anchoranalysis.image.voxel.assigner	Assigns values to some or all voxels.
org.anchoranalysis.image.voxel.binary	The BinaryVoxels class and related operations.
org.anchoranalysis.image.voxel.binary.connected	Creating an ObjectCollection that is a connected component labelling of a BinaryVoxels.
org.anchoranalysis.image.voxel.buffer	A buffer of voxel-values, usually corresponding to a single z-slice in Voxels.
org.anchoranalysis.image.voxel.buffer.primitive	Conversion of both primitive data types and image structures between Anchor's data-structures and other representations.
org.anchoranalysis.image.voxel.buffer.slice	A container with voxel-buffers for each z-slice.
org.anchoranalysis.image.voxel.convert	Converting Voxels to different data-types.
org.anchoranalysis.image.voxel.extracter	Methods to read/copy/duplicate portions of voxels.
org.anchoranalysis.image.voxel.factory	Creates new instances of Voxels and VoxelsUntyped with specific data-types.
org.anchoranalysis.image.voxel.projection	Classes for calculating differnet kind of projections of voxel values across multiple buffers.
org.anchoranalysis.image.voxel.projection.extrema	Classes for performing both a Maximum Intensity Projection and a minimum projection.
org.anchoranalysis.io.bioformats.copyconvert.toint	Converts the byte stream opened by Bioformats into channels of IntBuffer.
org.anchoranalysis.plugin.image.segment.watershed.encoding	Encoding voxels in a watershed-transformation implementation.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel

Methods in org.anchoranalysis.image.voxel that return types with arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
Voxels<UnsignedIntBuffer>	VoxelsUntyped.asInt()	Casts to use a UnsignedIntBuffer if the voxels contain this data-type, otherwise throws a IncorrectVoxelTypeException.
VoxelsExtracter<UnsignedIntBuffer>	VoxelsUnsignedInt.extract()

Constructor parameters in org.anchoranalysis.image.voxel with type arguments of type UnsignedIntBuffer

Modifier	Constructor	Description
	VoxelsUnsignedInt(SliceBufferIndex<UnsignedIntBuffer> buffer)	Create from a buffer, indexed by slice.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.arithmetic

Method parameters in org.anchoranalysis.image.voxel.arithmetic with type arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
static VoxelsArithmetic	VoxelsArithmeticFactory.createUnsignedInt(Extent extent, IntFunction<UnsignedIntBuffer> bufferForSlice)	Create a VoxelsArithmetic for UnsignedIntBuffer.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.assigner

Method parameters in org.anchoranalysis.image.voxel.assigner with type arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
static VoxelsAssigner	VoxelsAssignerFactory.createUnsignedInt(Voxels<UnsignedIntBuffer> voxels, int valueToAssign)	Create a a VoxelsAssigner for a UnsignedIntBuffer.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.binary

Methods in org.anchoranalysis.image.voxel.binary that return types with arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
static BinaryVoxels<UnsignedIntBuffer>	BinaryVoxelsFactory.reuseInt(Voxels<UnsignedIntBuffer> voxels, BinaryValuesInt binaryValues)	Reuses an existing voxel-buffer (of type unsigned int) as a binary-version which should have only two intensity-values representing off and on.

Method parameters in org.anchoranalysis.image.voxel.binary with type arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
static BinaryVoxels<UnsignedIntBuffer>	BinaryVoxelsFactory.reuseInt(Voxels<UnsignedIntBuffer> voxels, BinaryValuesInt binaryValues)	Reuses an existing voxel-buffer (of type unsigned int) as a binary-version which should have only two intensity-values representing off and on.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.binary.connected

Method parameters in org.anchoranalysis.image.voxel.binary.connected with type arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
ObjectCollection	ObjectsFromConnectedComponentsFactory.createUnsignedInt(BinaryVoxels<UnsignedIntBuffer> voxels)	Finds the connected-components in unsigned int voxels.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.buffer

Methods in org.anchoranalysis.image.voxel.buffer that return types with arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
static VoxelBuffer<UnsignedIntBuffer>[]	VoxelBufferFactory.allocateUnsignedIntArray(int size)	Creates an array of unsigned int voxel-buffers of given size.
static VoxelBuffer<UnsignedIntBuffer>	VoxelBufferWrap.unsignedIntArray(int[] array)	Wraps an unsigned-int buffer into a voxel-buffer.
static VoxelBuffer<UnsignedIntBuffer>	VoxelBufferWrap.unsignedIntBuffer(UnsignedIntBuffer buffer)	Wraps an unsigned-int buffer (represented by a NIO signed-buffer) into a voxel-buffer.

Methods in org.anchoranalysis.image.voxel.buffer with parameters of type UnsignedIntBuffer

Modifier and Type	Method	Description
static VoxelBuffer<UnsignedIntBuffer>	VoxelBufferWrap.unsignedIntBuffer(UnsignedIntBuffer buffer)	Wraps an unsigned-int buffer (represented by a NIO signed-buffer) into a voxel-buffer.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.buffer.primitive

Methods in org.anchoranalysis.image.voxel.buffer.primitive that return UnsignedIntBuffer

Modifier and Type	Method	Description
static UnsignedIntBuffer	UnsignedIntBuffer.allocate(int capacity)	Allocates a new (direct) buffer of unsigned-ints.
static UnsignedIntBuffer	UnsignedIntBuffer.wrapRaw(int[] array)	Exposes a raw int-array as a buffer with unsigned-ints.
static UnsignedIntBuffer	UnsignedIntBuffer.wrapRaw(IntBuffer bufferRaw)	Exposes a raw UnsignedIntBuffer as a buffer with unsigned-ints.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.buffer.slice

Methods in org.anchoranalysis.image.voxel.buffer.slice that return types with arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
static SliceBufferIndex<UnsignedIntBuffer>	FromInt.createInitialized(Extent extent)	Create a buffer of a particular size, that has been initialized.
static SliceBufferIndex<UnsignedIntBuffer>	FromInt.createUninitialized(Extent extent)	Create a buffer of a particular size, that has not been initialized.
VoxelBuffer<UnsignedIntBuffer>	FromInt.slice(int z)

Method parameters in org.anchoranalysis.image.voxel.buffer.slice with type arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
void	FromInt.replaceSlice(int z, VoxelBuffer<UnsignedIntBuffer> sliceToAssign)

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.convert

Methods in org.anchoranalysis.image.voxel.convert with parameters of type UnsignedIntBuffer

Modifier and Type	Method	Description
protected void	ToUnsignedInt.convertFloat(FloatBuffer in, UnsignedIntBuffer out)
protected void	ToUnsignedInt.convertUnsignedByte(UnsignedByteBuffer in, UnsignedIntBuffer out)
protected void	ToFloatNoScaling.convertUnsignedInt(UnsignedIntBuffer in, FloatBuffer out)
protected void	ToUnsignedByteNoScaling.convertUnsignedInt(UnsignedIntBuffer in, UnsignedByteBuffer out)
protected void	ToUnsignedByteScaleByMaxValue.convertUnsignedInt(UnsignedIntBuffer in, UnsignedByteBuffer out)
protected void	ToUnsignedByteScaleByMinMaxValue.convertUnsignedInt(UnsignedIntBuffer in, UnsignedByteBuffer out)
protected void	ToUnsignedByteScaleByType.convertUnsignedInt(UnsignedIntBuffer in, UnsignedByteBuffer out)
protected void	ToUnsignedInt.convertUnsignedInt(UnsignedIntBuffer in, UnsignedIntBuffer out)
protected void	ToUnsignedShortNoScaling.convertUnsignedInt(UnsignedIntBuffer in, UnsignedShortBuffer out)
protected void	ToUnsignedShortScaleByType.convertUnsignedInt(UnsignedIntBuffer in, UnsignedShortBuffer out)
protected abstract void	VoxelsConverter.convertUnsignedInt(UnsignedIntBuffer in, T out)	Copies a value from the current position in a UnsignedIntBuffer to the current position in a buffer of type T.
protected void	ToUnsignedInt.convertUnsignedShort(UnsignedShortBuffer in, UnsignedIntBuffer out)

Method parameters in org.anchoranalysis.image.voxel.convert with type arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
void	VoxelsConverter.copyFromUnsignedInt(Voxels<UnsignedIntBuffer> from, Voxels<T> to)	Copies voxels from a source of type @{link UnsignedIntBuffer} to voxels of type T.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.extracter

Methods in org.anchoranalysis.image.voxel.extracter that return types with arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
static VoxelsExtracter<UnsignedIntBuffer>	VoxelsExtracterFactory.createUnsignedInt(Voxels<UnsignedIntBuffer> voxels)	Create voxels-extracter for UnsignedIntBuffer.

Method parameters in org.anchoranalysis.image.voxel.extracter with type arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
static VoxelsExtracter<UnsignedIntBuffer>	VoxelsExtracterFactory.createUnsignedInt(Voxels<UnsignedIntBuffer> voxels)	Create voxels-extracter for UnsignedIntBuffer.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.factory

Methods in org.anchoranalysis.image.voxel.factory that return types with arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
static VoxelsFactoryTypeBound<UnsignedIntBuffer>	VoxelsFactory.getUnsignedInt()	A factory that creates voxels of type unsigned int.

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.projection

Methods in org.anchoranalysis.image.voxel.projection that return types with arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
ProjectableBuffer<UnsignedIntBuffer>	MeanIntensityProjection.createUnsignedInt(Extent extent)
abstract ProjectableBuffer<UnsignedIntBuffer>	Projection.createUnsignedInt(Extent extent)	Creates a buffer for a maximum-intensity projection for unsigned int voxels.
ProjectableBuffer<UnsignedIntBuffer>	StandardDeviationIntensityProjection.createUnsignedInt(Extent extent)

Uses of UnsignedIntBuffer in org.anchoranalysis.image.voxel.projection.extrema

Methods in org.anchoranalysis.image.voxel.projection.extrema that return types with arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
ProjectableBuffer<UnsignedIntBuffer>	ComparisonProjection.createUnsignedInt(Extent extent)

Uses of UnsignedIntBuffer in org.anchoranalysis.io.bioformats.copyconvert.toint

Methods in org.anchoranalysis.io.bioformats.copyconvert.toint with parameters of type UnsignedIntBuffer

Modifier and Type	Method	Description
protected void	UnsignedIntFromUnsignedInt.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedIntBuffer destination, OrientationChange orientationCorrection)
protected void	UnsignedIntFromUnsignedInt.copyKeepOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedIntBuffer destination)

Uses of UnsignedIntBuffer in org.anchoranalysis.plugin.image.segment.watershed.encoding

Methods in org.anchoranalysis.plugin.image.segment.watershed.encoding that return types with arguments of type UnsignedIntBuffer

Modifier and Type	Method	Description
Voxels<UnsignedIntBuffer>	EncodedVoxels.voxels()	The voxels containing encoded information.

Constructors in org.anchoranalysis.plugin.image.segment.watershed.encoding with parameters of type UnsignedIntBuffer

Modifier	Constructor	Description
	EncodedIntBuffer(UnsignedIntBuffer delegate, WatershedEncoding encoding)

Constructor parameters in org.anchoranalysis.plugin.image.segment.watershed.encoding with type arguments of type UnsignedIntBuffer

Modifier	Constructor	Description
	EncodedVoxels(Voxels<UnsignedIntBuffer> voxels)	Creates a new EncodedVoxels instance.