Uses of Class
org.anchoranalysis.image.voxel.buffer.primitive.UnsignedShortBuffer

Packages that use UnsignedShortBuffer

Package	Description
org.anchoranalysis.image.core.channel.convert	Converts a channel to other data-types.
org.anchoranalysis.image.voxel	Data-structures to store and manipulate image raster-data or voxels.
org.anchoranalysis.image.voxel.arithmetic	Arithmetic operations for Voxels.
org.anchoranalysis.image.voxel.assigner	Assigns values to some or all voxels.
org.anchoranalysis.image.voxel.buffer	A buffer of voxel-values, usually corresponding to a single z-slice in Voxels.
org.anchoranalysis.image.voxel.buffer.primitive	Conversion of both primitive data types and image structures between Anchor's data-structures and other representations.
org.anchoranalysis.image.voxel.buffer.slice	A container with voxel-buffers for each z-slice.
org.anchoranalysis.image.voxel.convert	Converting Voxels to different data-types.
org.anchoranalysis.image.voxel.convert.bufferedimage	Converts anchor data-structures to the BufferedImage used by Java's AWT.
org.anchoranalysis.image.voxel.convert.imglib2	Converts anchor data-structures to those used by ImgLib2.
org.anchoranalysis.image.voxel.extracter	Methods to read/copy/duplicate portions of voxels.
org.anchoranalysis.image.voxel.factory	Creates new instances of Voxels and VoxelsUntyped with specific data-types.
org.anchoranalysis.image.voxel.projection	Classes for calculating differnet kind of projections of voxel values across multiple buffers.
org.anchoranalysis.image.voxel.projection.extrema	Classes for performing both a Maximum Intensity Projection and a minimum projection.
org.anchoranalysis.image.voxel.resizer	Different interpolator methods to use when scaling voxels.
org.anchoranalysis.io.bioformats.copyconvert.toshort	Converts the byte stream opened by Bioformats into channels of ShortBuffer.
org.anchoranalysis.io.imagej.convert	Converts to and from ImageJ data-structures for images.
org.anchoranalysis.io.imagej.resizer	Image interpolation when scaling using ImageJ.
org.anchoranalysis.plugin.opencv.convert	Conversion to/from OpenCV data-structures.
org.anchoranalysis.plugin.opencv.resizer	Interpolation non-beans that use OpenCV.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.core.channel.convert

Constructor parameters in org.anchoranalysis.image.core.channel.convert with type arguments of type UnsignedShortBuffer

Modifier	Constructor	Description
	ToUnsignedShort(VoxelsConverter<UnsignedShortBuffer> voxelsConverter)	Convert with a particular VoxelsConverter.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel

Methods in org.anchoranalysis.image.voxel that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
Voxels<UnsignedShortBuffer>	VoxelsUntyped.asShort()	Casts to use a UnsignedShortBuffer if the voxels contain this data-type, otherwise throws a IncorrectVoxelTypeException.
VoxelsExtracter<UnsignedShortBuffer>	VoxelsUnsignedShort.extract()

Constructor parameters in org.anchoranalysis.image.voxel with type arguments of type UnsignedShortBuffer

Modifier	Constructor	Description
	VoxelsUnsignedShort(SliceBufferIndex<UnsignedShortBuffer> buffer)	Create from a buffer, indexed by slice.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.arithmetic

Method parameters in org.anchoranalysis.image.voxel.arithmetic with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static VoxelsArithmetic	VoxelsArithmeticFactory.createUnsignedShort(Extent extent, IntFunction<UnsignedShortBuffer> bufferForSlice)	Create a VoxelsArithmetic for UnsignedShortBuffer.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.assigner

Method parameters in org.anchoranalysis.image.voxel.assigner with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static VoxelsAssigner	VoxelsAssignerFactory.createUnsignedShort(Voxels<UnsignedShortBuffer> voxels, int valueToAssign)	Create a VoxelsAssigner for a UnsignedShortBuffer.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.buffer

Methods in org.anchoranalysis.image.voxel.buffer that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static VoxelBuffer<UnsignedShortBuffer>	VoxelBufferFactory.allocateUnsignedShort(int capacity)	Allocates a new unsigned short voxel-buffers of given size.
static VoxelBuffer<UnsignedShortBuffer>[]	VoxelBufferFactory.allocateUnsignedShortArray(int size)	Creates an array of unsigned short voxel-buffers of given size.
static VoxelBuffer<UnsignedShortBuffer>	VoxelBufferWrap.unsignedShortArray(short[] array)	Wraps an existing array (encoding unsigned shorts as a signed array) as a voxel-buffer.
static VoxelBuffer<UnsignedShortBuffer>	VoxelBufferWrap.unsignedShortBuffer(UnsignedShortBuffer buffer)	Wraps an unsigned-short buffer into a voxel-buffer.
static VoxelBuffer<UnsignedShortBuffer>	VoxelBufferWrap.unsignedShortRaw(ShortBuffer buffer)	Wraps an unsigned-short buffer (represented by a NIO signed-buffer) into a voxel-buffer.

Methods in org.anchoranalysis.image.voxel.buffer with parameters of type UnsignedShortBuffer

Modifier and Type	Method	Description
static VoxelBuffer<UnsignedShortBuffer>	VoxelBufferWrap.unsignedShortBuffer(UnsignedShortBuffer buffer)	Wraps an unsigned-short buffer into a voxel-buffer.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.buffer.primitive

Methods in org.anchoranalysis.image.voxel.buffer.primitive that return UnsignedShortBuffer

Modifier and Type	Method	Description
static UnsignedShortBuffer	UnsignedShortBuffer.allocate(int capacity)	Allocates a new (direct) buffer of unsigned-shorts.
static UnsignedShortBuffer	UnsignedShortBuffer.wrapRaw(short[] array)	Exposes a raw short-array as a buffer with unsigned-shorts.
static UnsignedShortBuffer	UnsignedShortBuffer.wrapRaw(ShortBuffer bufferRaw)	Exposes a raw UnsignedShortBuffer as a buffer with unsigned-shorts.

Methods in org.anchoranalysis.image.voxel.buffer.primitive with parameters of type UnsignedShortBuffer

Modifier and Type	Method	Description
void	UnsignedShortBuffer.put(UnsignedShortBuffer source)	Relative put-method from an unsigned short buffer, represented by a UnsignedShortBuffer.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.buffer.slice

Methods in org.anchoranalysis.image.voxel.buffer.slice that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static SliceBufferIndex<UnsignedShortBuffer>	FromShort.createInitialized(Extent extent)	Create a buffer of a particular size, that has been initialized.
static SliceBufferIndex<UnsignedShortBuffer>	FromShort.createUninitialized(Extent extent)	Create a buffer of a particular size, that has not been initialized.
VoxelBuffer<UnsignedShortBuffer>	FromShort.slice(int z)

Method parameters in org.anchoranalysis.image.voxel.buffer.slice with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
void	FromShort.replaceSlice(int z, VoxelBuffer<UnsignedShortBuffer> sliceToAssign)

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.convert

Methods in org.anchoranalysis.image.voxel.convert with parameters of type UnsignedShortBuffer

Modifier and Type	Method	Description
protected void	ToUnsignedShortNoScaling.convertFloat(FloatBuffer in, UnsignedShortBuffer out)
protected void	ToUnsignedShortScaleByType.convertFloat(FloatBuffer in, UnsignedShortBuffer out)	Converts the current position in a FloatBuffer to the current position in a UnsignedShortBuffer.
protected void	ToUnsignedShortNoScaling.convertUnsignedByte(UnsignedByteBuffer in, UnsignedShortBuffer out)
protected void	ToUnsignedShortScaleByType.convertUnsignedByte(UnsignedByteBuffer in, UnsignedShortBuffer out)
protected void	ToUnsignedShortNoScaling.convertUnsignedInt(UnsignedIntBuffer in, UnsignedShortBuffer out)
protected void	ToUnsignedShortScaleByType.convertUnsignedInt(UnsignedIntBuffer in, UnsignedShortBuffer out)
protected void	ToFloatNoScaling.convertUnsignedShort(UnsignedShortBuffer in, FloatBuffer out)
protected void	ToUnsignedByteNoScaling.convertUnsignedShort(UnsignedShortBuffer in, UnsignedByteBuffer out)
protected void	ToUnsignedByteScaleByMaxValue.convertUnsignedShort(UnsignedShortBuffer in, UnsignedByteBuffer out)
protected void	ToUnsignedByteScaleByMinMaxValue.convertUnsignedShort(UnsignedShortBuffer in, UnsignedByteBuffer out)
protected void	ToUnsignedByteScaleByType.convertUnsignedShort(UnsignedShortBuffer in, UnsignedByteBuffer out)
protected void	ToUnsignedInt.convertUnsignedShort(UnsignedShortBuffer in, UnsignedIntBuffer out)
protected void	ToUnsignedShortNoScaling.convertUnsignedShort(UnsignedShortBuffer in, UnsignedShortBuffer out)
protected void	ToUnsignedShortScaleByType.convertUnsignedShort(UnsignedShortBuffer in, UnsignedShortBuffer out)
protected abstract void	VoxelsConverter.convertUnsignedShort(UnsignedShortBuffer in, T out)	Copies a value from the current position in a UnsignedShortBuffer to the current position in a buffer of type T.

Method parameters in org.anchoranalysis.image.voxel.convert with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
void	VoxelsConverter.copyFromUnsignedShort(Voxels<UnsignedShortBuffer> from, Voxels<T> to)	Copies voxels from a source of type @{link UnsignedShortBuffer} to voxels of type T.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.convert.bufferedimage

Method parameters in org.anchoranalysis.image.voxel.convert.bufferedimage with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static BufferedImage	BufferedImageFromVoxels.createGrayscaleShort(Voxels<UnsignedShortBuffer> voxels)	Creates a BufferedImage from a Voxels<UnsignedShortBuffer>.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.convert.imglib2

Method parameters in org.anchoranalysis.image.voxel.convert.imglib2 with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static net.imglib2.img.Img<net.imglib2.type.numeric.integer.UnsignedShortType>	ConvertToImg.fromShort(VoxelBuffer<UnsignedShortBuffer> buffer, Extent extent)	Creates an Img from a VoxelBuffer with an unsigned short data-type.
static net.imglib2.img.Img<net.imglib2.type.numeric.integer.UnsignedShortType>	ConvertToImg.fromShort(Voxels<UnsignedShortBuffer> voxels)	Creates an Img from Voxels with an unsigned short data-type.
static net.imglib2.img.NativeImg<net.imglib2.type.numeric.integer.UnsignedShortType,net.imglib2.img.basictypeaccess.array.ShortArray>	ConvertToNativeImg.fromShort(Voxels<UnsignedShortBuffer> voxels)	Creates an NativeImg from Voxels with an unsigned short data-type.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.extracter

Methods in org.anchoranalysis.image.voxel.extracter that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static VoxelsExtracter<UnsignedShortBuffer>	VoxelsExtracterFactory.createUnsignedShort(Voxels<UnsignedShortBuffer> voxels)	Create voxels-extracter for UnsignedShortBuffer.

Method parameters in org.anchoranalysis.image.voxel.extracter with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static VoxelsExtracter<UnsignedShortBuffer>	VoxelsExtracterFactory.createUnsignedShort(Voxels<UnsignedShortBuffer> voxels)	Create voxels-extracter for UnsignedShortBuffer.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.factory

Methods in org.anchoranalysis.image.voxel.factory that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static VoxelsFactoryTypeBound<UnsignedShortBuffer>	VoxelsFactory.getUnsignedShort()	A factory that creates voxels of type unsigned short.

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.projection

Methods in org.anchoranalysis.image.voxel.projection that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
ProjectableBuffer<UnsignedShortBuffer>	MeanIntensityProjection.createUnsignedShort(Extent extent)
abstract ProjectableBuffer<UnsignedShortBuffer>	Projection.createUnsignedShort(Extent extent)	Creates a buffer for a maximum-intensity projection for unsigned short voxels.
ProjectableBuffer<UnsignedShortBuffer>	StandardDeviationIntensityProjection.createUnsignedShort(Extent extent)

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.projection.extrema

Methods in org.anchoranalysis.image.voxel.projection.extrema that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
ProjectableBuffer<UnsignedShortBuffer>	ComparisonProjection.createUnsignedShort(Extent extent)

Uses of UnsignedShortBuffer in org.anchoranalysis.image.voxel.resizer

Methods in org.anchoranalysis.image.voxel.resizer that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
protected abstract VoxelBuffer<UnsignedShortBuffer>	VoxelsResizer.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)	Interpolates from voxelsSource to voxelsDestination for unsigned 16-bit buffers.
protected VoxelBuffer<UnsignedShortBuffer>	VoxelsResizerExecutionTime.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)
VoxelBuffer<UnsignedShortBuffer>	VoxelsResizerImgLib2.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)
VoxelBuffer<UnsignedShortBuffer>	VoxelsResizerNone.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)

Method parameters in org.anchoranalysis.image.voxel.resizer with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
protected abstract VoxelBuffer<UnsignedShortBuffer>	VoxelsResizer.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)	Interpolates from voxelsSource to voxelsDestination for unsigned 16-bit buffers.
protected VoxelBuffer<UnsignedShortBuffer>	VoxelsResizerExecutionTime.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)
VoxelBuffer<UnsignedShortBuffer>	VoxelsResizerImgLib2.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)
VoxelBuffer<UnsignedShortBuffer>	VoxelsResizerNone.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)

Uses of UnsignedShortBuffer in org.anchoranalysis.io.bioformats.copyconvert.toshort

Methods in org.anchoranalysis.io.bioformats.copyconvert.toshort with parameters of type UnsignedShortBuffer

Modifier and Type	Method	Description
protected void	ToUnsignedShort.copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedShortBuffer destination, OrientationChange orientationCorrection)
protected void	ToUnsignedShort.copyKeepOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedShortBuffer destination)

Uses of UnsignedShortBuffer in org.anchoranalysis.io.imagej.convert

Methods in org.anchoranalysis.io.imagej.convert that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static VoxelBuffer<UnsignedShortBuffer>	ConvertToVoxelBuffer.asShort(ij.process.ImageProcessor processor)	Convert a ImageProcessor to VoxelBuffer<UnsignedShortBuffer>

Method parameters in org.anchoranalysis.io.imagej.convert with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static ij.process.ImageProcessor	ConvertToImageProcessor.fromShort(SliceBufferIndex<UnsignedShortBuffer> pixelsForSlice, int z)	Creates a ImageProcessor by extracting a slice from a SliceBufferIndex of type UnsignedShortBuffer.
static ij.process.ImageProcessor	ConvertToImageProcessor.fromShort(VoxelBuffer<UnsignedShortBuffer> slice, Extent extent)	Creates a ImageProcessor from voxel-buffer (of type ShortBuffer) that is already a slice.

Uses of UnsignedShortBuffer in org.anchoranalysis.io.imagej.resizer

Methods in org.anchoranalysis.io.imagej.resizer that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
VoxelBuffer<UnsignedShortBuffer>	VoxelsResizerImageJ.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)

Method parameters in org.anchoranalysis.io.imagej.resizer with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
VoxelBuffer<UnsignedShortBuffer>	VoxelsResizerImageJ.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)

Uses of UnsignedShortBuffer in org.anchoranalysis.plugin.opencv.convert

Methods in org.anchoranalysis.plugin.opencv.convert that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static VoxelBuffer<UnsignedShortBuffer>	VoxelBufferFromMat.unsignedShortFromMat(org.opencv.core.Mat mat, Extent extent)	Converts a Mat to a VoxelBuffer with voxel data-type UnsignedShortBuffer.

Method parameters in org.anchoranalysis.plugin.opencv.convert with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
static org.opencv.core.Mat	ConvertToMat.fromVoxelBufferShort(VoxelBuffer<UnsignedShortBuffer> voxelBuffer, Extent extent)	Converts a VoxelBuffer of type UnsignedShortBuffer to a Mat.
static org.opencv.core.Mat	ConvertToMat.fromVoxelsShort(Voxels<UnsignedShortBuffer> voxels)	Converts a Voxels of type UnsignedShortBuffer to a Mat.

Uses of UnsignedShortBuffer in org.anchoranalysis.plugin.opencv.resizer

Methods in org.anchoranalysis.plugin.opencv.resizer that return types with arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
protected VoxelBuffer<UnsignedShortBuffer>	VoxelsResizerOpenCV.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)

Method parameters in org.anchoranalysis.plugin.opencv.resizer with type arguments of type UnsignedShortBuffer

Modifier and Type	Method	Description
protected VoxelBuffer<UnsignedShortBuffer>	VoxelsResizerOpenCV.resizeShort(VoxelBuffer<UnsignedShortBuffer> voxelsSource, VoxelBuffer<UnsignedShortBuffer> voxelsDestination, Extent extentSource, Extent extentDestination)