Package org.anchoranalysis.io.bioformats.bean.writer

Class Tiff

Object

AnchorBean<StackWriter>

StackWriter

BioformatsWriter

Tiff

public class Tiff
extends BioformatsWriter

Writes a stack to the filesystem as a TIFF using the Bioformats library.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
Tiff()	Default constructor.

Method Summary

Modifier and Type	Method	Description
protected loci.formats.IFormatWriter	createWriter()	Creates or gets an instance of IFormatWriter which dictates the file format to use for writing.
ImageFileFormat	fileFormat(StackWriteOptions writeOptions)	The file format that will be written by the generator.
void	writeStack(Stack stack, Path filePath, StackWriteOptions options)	Writes a stack to the filesystem at a particular path.

Methods inherited from class org.anchoranalysis.image.io.bean.stack.writer.StackWriter

fileFormatWarnUnexpected, writeStackWithExtension

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Tiff

public Tiff()

Default constructor.

Method Details

writeStack

public void writeStack(Stack stack,
 Path filePath,
 StackWriteOptions options)
                throws ImageIOException

Description copied from class: StackWriter

Writes a stack to the filesystem at a particular path.

Overrides:

writeStack in class BioformatsWriter

Parameters:

stack - the stack to write.

filePath - the path to write the file to.

options - options which may influence how a raster is written.

Throws:

ImageIOException - if anything goes wrong while writing.

fileFormat

public ImageFileFormat fileFormat(StackWriteOptions writeOptions)

Description copied from class: StackWriter

The file format that will be written by the generator.

Specified by:

fileFormat in class StackWriter

Parameters:

writeOptions - options which may influence how a raster is written.

Returns:

the image file-format.

createWriter

protected loci.formats.IFormatWriter createWriter()
                                           throws ImageIOException

Description copied from class: BioformatsWriter

Creates or gets an instance of IFormatWriter which dictates the file format to use for writing.

Specified by:

createWriter in class BioformatsWriter

Returns:

a newly created writer.

Throws:

ImageIOException - if a writer cannot be created successfully.