Package org.anchoranalysis.io.bioformats.copyconvert.tobyte

Class UnsignedByteFromUnsignedByteNoInterleaving

Object

ConvertTo<UnsignedByteBuffer>

ToUnsignedByte

UnsignedByteFromUnsignedByte

UnsignedByteFromUnsignedByteNoInterleaving

public class UnsignedByteFromUnsignedByteNoInterleaving
extends UnsignedByteFromUnsignedByte

Converts a ByteBuffer encoding unsigned bytes (no interleaving) to unsigned byte type, as expected in an Anchor VoxelBuffer.

This also supports RGB-encoded bytes, where multiple channels are encoded into each voxel, but without interleaving.

Author:

Owen Feehan

Field Summary

Fields inherited from class org.anchoranalysis.io.bioformats.copyconvert.ConvertTo

destinationSize, extent, sourceIncrement, sourceSize

Constructor Summary

Constructors

Constructor	Description
UnsignedByteFromUnsignedByteNoInterleaving()

Method Summary

Modifier and Type	Method	Description
protected void	copyChangeOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedByteBuffer destination, OrientationChange orientationCorrection)	Copy the bytes, changing orientation.
protected void	copyKeepOrientation(ByteBuffer source, boolean littleEndian, int channelIndexRelative, UnsignedByteBuffer destination)	Copy the bytes, without changing orientation.

Methods inherited from class org.anchoranalysis.io.bioformats.copyconvert.tobyte.UnsignedByteFromUnsignedByte

bytesPerVoxel, convert, supportsMultipleChannelsPerSourceBuffer

Methods inherited from class org.anchoranalysis.io.bioformats.copyconvert.ConvertTo

convertSliceOfSingleChannel, copyAllChannels, setupBefore

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

UnsignedByteFromUnsignedByteNoInterleaving

public UnsignedByteFromUnsignedByteNoInterleaving()

Method Details

copyKeepOrientation

protected void copyKeepOrientation(ByteBuffer source,
 boolean littleEndian,
 int channelIndexRelative,
 UnsignedByteBuffer destination)

Description copied from class: ConvertTo

Copy the bytes, without changing orientation.

This is kept separate to ConvertTo.copyChangeOrientation(java.nio.ByteBuffer, boolean, int, T, org.anchoranalysis.image.core.dimensions.OrientationChange) as it can be done slightly more efficiently.

Specified by:

copyKeepOrientation in class ConvertTo<UnsignedByteBuffer>

Parameters:

source - the buffer we copy all channels from.

littleEndian - true iff the bytes in source are in little-endian order.

channelIndexRelative - 0 if the buffer is non interleaved, or otherwise the index of the channel among the interleaved channels.

destination - finds an appropriate destination channel for a particular relative-channel-index.

copyChangeOrientation

protected void copyChangeOrientation(ByteBuffer source,
 boolean littleEndian,
 int channelIndexRelative,
 UnsignedByteBuffer destination,
 OrientationChange orientationCorrection)

Description copied from class: ConvertTo

Copy the bytes, changing orientation.

Specified by:

copyChangeOrientation in class ConvertTo<UnsignedByteBuffer>

Parameters:

source - the buffer we copy all channels from.

littleEndian - true iff the bytes in source are in little-endian order.

channelIndexRelative - 0 if the buffer is non interleaved, or otherwise the index of the channel among the interleaved channels.

destination - finds an appropriate destination channel for a particular relative-channel-index.

orientationCorrection - any correction of orientation to be applied as bytes are converted.