Package org.anchoranalysis.io.imagej.bean.stack.writer

Class ImageJRasterWriter

Object

AnchorBean<StackWriter>

StackWriter

ImageJRasterWriter

Direct Known Subclasses:

PNG, Tiff

public abstract class ImageJRasterWriter
extends StackWriter

Base class for writing a raster using ImageJ.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
ImageJRasterWriter()

Method Summary

Modifier and Type	Method	Description
protected abstract boolean	writeRaster(ij.io.FileSaver fileSaver, String path, boolean asStack)	Writes an annotation to the filesystem at outPath.
void	writeStack(Stack stack, Path filePath, StackWriteOptions options)	Writes a stack to the filesystem at a particular path.
protected void	writeStackTime(Stack stack, Path path, boolean makeRGB)	Writes a stack as a time-sequence (many images together in a single file.).

Methods inherited from class org.anchoranalysis.image.io.bean.stack.writer.StackWriter

fileFormat, fileFormatWarnUnexpected, writeStackWithExtension

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ImageJRasterWriter

public ImageJRasterWriter()

Method Details

writeStack

public void writeStack(Stack stack,
 Path filePath,
 StackWriteOptions options)
                throws ImageIOException

Description copied from class: StackWriter

Writes a stack to the filesystem at a particular path.

Specified by:

writeStack in class StackWriter

Parameters:

stack - the stack to write.

filePath - the path to write the file to.

options - options which may influence how a raster is written.

Throws:

ImageIOException - if anything goes wrong while writing.

writeRaster

protected abstract boolean writeRaster(ij.io.FileSaver fileSaver,
 String path,
 boolean asStack)
                                throws ImageIOException

Writes an annotation to the filesystem at outPath.

Parameters:

fileSaver - imagej class for saving files

path - where to write the annotation to

asStack - whether the output will produce a stack (many images together) or not.

Returns:

true if successfully written.

Throws:

ImageIOException - if anything goes wrong writing the input.

writeStackTime

protected void writeStackTime(Stack stack,
 Path path,
 boolean makeRGB)
                       throws ImageIOException

Writes a stack as a time-sequence (many images together in a single file.).

Parameters:

stack - the stack to write

path - where on the filesystem to write to

makeRGB - if true, the image is saved as a RGB image rather than independent channels.

Throws:

ImageIOException - if anything goes wrong writing.