Package org.anchoranalysis.io.imagej.convert

Class ConvertToImagePlus

Object

ConvertToImagePlus

public class ConvertToImagePlus
extends Object

Converts a channel or voxels into a ImagePlus.

Author:

Owen Feehan

Method Summary

Modifier and Type	Method	Description
static ij.ImagePlus	from(Channel channel)	Creates an ImagePlus from a Channel.
static ij.ImagePlus	from(Stack stack, boolean makeRGB)	Creates an ImagePlus from a Stack.
static ij.ImagePlus	from(VoxelsUntyped voxels)	Creates an ImagePlus from a VoxelsUntyped.
static ij.ImagePlus	fromSlice(Voxels<UnsignedByteBuffer> voxels, int sliceIndex, String name)	Creates an ImagePlus from one slice of a Voxels<UnsignedByteBuffer> voxels.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

from

public static ij.ImagePlus from(VoxelsUntyped voxels)
                         throws ImageJConversionException

Creates an ImagePlus from a VoxelsUntyped.

The default image-resolution (see Resolution() is employed.

Parameters:

voxels - the voxels to be converted

Returns:

a newly created image-plus, reusing the input voxel's buffer without copying.

Throws:

ImageJConversionException - if the voxels are neither unsigned byte nor unsigned short (the only two supported types)

from

public static ij.ImagePlus from(Channel channel)
                         throws ImageJConversionException

Creates an ImagePlus from a Channel.

Parameters:

channel - the channel to be converted

Returns:

a newly created image-plus, reusing the input channels's buffer without copying.

Throws:

ImageJConversionException - if the voxels are neither unsigned byte nor unsigned short (the only two supported types)

from

public static ij.ImagePlus from(Stack stack,
 boolean makeRGB)
                         throws ImageJConversionException

Creates an ImagePlus from a Stack.

Parameters:

stack - the stack of channels to be converted

makeRGB - if true, the stack is assumed to have respectively red, green, blue channels exactly. and outputted as a RGB-type image, otherwise an interleaved image-stack is created.

Returns:

a newly created image-plus, reusing the input channels's buffer without copying.

Throws:

ImageJConversionException - if any RGB channel is not unsigned 8-bit

fromSlice

public static ij.ImagePlus fromSlice(Voxels<UnsignedByteBuffer> voxels,
 int sliceIndex,
 String name)

Creates an ImagePlus from one slice of a Voxels<UnsignedByteBuffer> voxels.

Parameters:

voxels - the voxels from which a slice will be extracted to be converted

sliceIndex - slice-index (z coordinate) to extract

name - the name to use in the image-plus

Returns:

a newly created image-plus, reusing the input channels's buffer without copying.