Uses of Class
org.anchoranalysis.io.input.bean.files.FilesProvider

Packages that use FilesProvider

Package	Description
org.anchoranalysis.io.input.bean.dictionary	Methods to provide a Dictionary.
org.anchoranalysis.io.input.bean.files	Methods to provide a collection of Files.
org.anchoranalysis.io.input.bean.path.provider	Methods to provide a single file-path.
org.anchoranalysis.plugin.annotation.bean.file	FilesProviders for providing annotations.
org.anchoranalysis.plugin.io.bean.file.provider	Implementations of FilesProvider.
org.anchoranalysis.plugin.io.bean.input.files	InputManagers that accept a set of named-files.
org.anchoranalysis.plugin.io.bean.input.files.provider	Implementations of FilesProvider.
org.anchoranalysis.plugin.quick.bean.structure	Specifying a structure of subdirectories and filenames when quickly defining an experiment.

Uses of FilesProvider in org.anchoranalysis.io.input.bean.dictionary

Methods in org.anchoranalysis.io.input.bean.dictionary that return FilesProvider

Modifier and Type	Method and Description
FilesProvider	ReadFromFile.getFiles() Provides a single file containing a dictionary.

Methods in org.anchoranalysis.io.input.bean.dictionary with parameters of type FilesProvider

Modifier and Type	Method and Description
void	ReadFromFile.setFiles(FilesProvider files) Provides a single file containing a dictionary.

Uses of FilesProvider in org.anchoranalysis.io.input.bean.files

Subclasses of FilesProvider in org.anchoranalysis.io.input.bean.files

Modifier and Type	Class and Description
class	FilesProviderUnary Like FilesProvider but employs a unary operator on a call to an existing FilesProvider.
class	FilesProviderWithDirectory Base class for implementations of FilesProvider which do have an associated directory.
class	FilesProviderWithDirectoryString A FilesProviderWithDirectory where the directory is optionally specified as a string constant
class	FilesProviderWithDirectoryUnary Like FilesProviderWithDirectory but employs a unary operator on a call to an existing FilesProviderWithDirectory.
class	FilesProviderWithoutDirectory Base class for implementations of FilesProvider which do not have an associated directory.
class	SearchDirectory Searches a directory for files whose paths match a particular predicate.
class	SingleFile Provides a single file only.
class	SpecificPathList A specific list of paths which form the input.

Methods in org.anchoranalysis.io.input.bean.files that return FilesProvider

Modifier and Type	Method and Description
FilesProvider	SpecificPathList.getFallback() If no paths can be found either from listPaths or the input-context, then the fallback is called if exists, otherwise an error is thrown
FilesProvider	FilesProviderUnary.getFiles()

Methods in org.anchoranalysis.io.input.bean.files with parameters of type FilesProvider

Modifier and Type	Method and Description
void	SpecificPathList.setFallback(FilesProvider fallback) If no paths can be found either from listPaths or the input-context, then the fallback is called if exists, otherwise an error is thrown
void	FilesProviderUnary.setFiles(FilesProvider files)

Uses of FilesProvider in org.anchoranalysis.io.input.bean.path.provider

Methods in org.anchoranalysis.io.input.bean.path.provider that return FilesProvider

Modifier and Type	Method and Description
FilesProvider	FromFiles.getFiles() A provider that should return exactly one File whose path is employed.

Methods in org.anchoranalysis.io.input.bean.path.provider with parameters of type FilesProvider

Modifier and Type	Method and Description
void	FromFiles.setFiles(FilesProvider files) A provider that should return exactly one File whose path is employed.

Uses of FilesProvider in org.anchoranalysis.plugin.annotation.bean.file

Subclasses of FilesProvider in org.anchoranalysis.plugin.annotation.bean.file

Modifier and Type	Class and Description
class	FromAnnotations<T extends AnnotatorStrategy>

Uses of FilesProvider in org.anchoranalysis.plugin.io.bean.file.provider

Subclasses of FilesProvider in org.anchoranalysis.plugin.io.bean.file.provider

Modifier and Type	Class and Description
class	Combine
class	FileSetFromStringSet
class	Limit
class	LimitWithDirectory
class	RandomOrder
class	RemoveMatching
class	Rooted Represents a set of files, with a different path-root depending on context.
class	SampleWithDirectory
class	SortAlphabetically
class	SortAlphabeticallyWithDirectory

Methods in org.anchoranalysis.plugin.io.bean.file.provider that return types with arguments of type FilesProvider

Modifier and Type	Method and Description
List<FilesProvider>	Combine.getList()

Method parameters in org.anchoranalysis.plugin.io.bean.file.provider with type arguments of type FilesProvider

Modifier and Type	Method and Description
void	Combine.setList(List<FilesProvider> list)

Uses of FilesProvider in org.anchoranalysis.plugin.io.bean.input.files

Methods in org.anchoranalysis.plugin.io.bean.input.files that return FilesProvider

Modifier and Type	Method and Description
FilesProvider	NamedFiles.getFiles() The files to use as inputs.

Methods in org.anchoranalysis.plugin.io.bean.input.files with parameters of type FilesProvider

Modifier and Type	Method and Description
protected InputsWithDirectory<T>	NamedFilesBase.createInputsFromFiles(FilesProvider files, InputManagerParameters parameters, java.util.function.Function<NamedFile,T> mapToInput) Creates a list of inputs from a FilesProvider which together with the namer can create the inputs.
void	NamedFiles.setFiles(FilesProvider files) The files to use as inputs.

Constructors in org.anchoranalysis.plugin.io.bean.input.files with parameters of type FilesProvider

Constructor and Description
NamedFiles(FilesProvider files)
NamedFiles(FilesProvider files, FileNamer namer)

Uses of FilesProvider in org.anchoranalysis.plugin.io.bean.input.files.provider

Subclasses of FilesProvider in org.anchoranalysis.plugin.io.bean.input.files.provider

Modifier and Type	Class and Description
class	DirectoryDepth Lists all directories to a certain depth
class	FilterForExistingFiles

Uses of FilesProvider in org.anchoranalysis.plugin.quick.bean.structure

Subclasses of FilesProvider in org.anchoranalysis.plugin.quick.bean.structure

Modifier and Type	Class and Description
class	ExperimentResultsExperimentStructure Finds some files produced in a previous experiment assuming a certain structure