Uses of Class
org.anchoranalysis.io.input.bean.path.DerivePath

Packages that use DerivePath

Package	Description
org.anchoranalysis.io.input.bean.grouper	Determines how inputs are aggregated into groups, if at all.
org.anchoranalysis.io.input.bean.path	Beans pertaining to manipulating and matching against file-paths.
org.anchoranalysis.mpp.io.bean.input	Beans for reading data structures related to marked point processes from the file system.
org.anchoranalysis.plugin.annotation.bean.comparer	Comparing the similarity of annotations from two images to each other.
org.anchoranalysis.plugin.annotation.bean.strategy	Strategies for how to annotate an image, such label per image etc.
org.anchoranalysis.plugin.image.task.bean.feature	Tasks pertaining to Features.
org.anchoranalysis.plugin.image.task.bean.labeller	Associating labels with images.
org.anchoranalysis.plugin.io.bean.grouper	Implementations of Grouper.
org.anchoranalysis.plugin.io.bean.input.channel	InputManagers that accept a set of named-channels.
org.anchoranalysis.plugin.io.bean.input.files.provider	Implementations of FilesProvider.
org.anchoranalysis.plugin.io.bean.input.filter	Implementations of InputManager that filter inputs.
org.anchoranalysis.plugin.io.bean.path.derive	Implementations of DerivePath.

Uses of DerivePath in org.anchoranalysis.io.input.bean.grouper

Methods in org.anchoranalysis.io.input.bean.grouper that return DerivePath

Modifier and Type	Method	Description
protected abstract DerivePath	FromDerivePath.selectDerivePath()	Selects the DerivePath to use for deriving a key.

Uses of DerivePath in org.anchoranalysis.io.input.bean.path

Subclasses of DerivePath in org.anchoranalysis.io.input.bean.path

Modifier and Type	Class	Description
class	Identity	Returns the same Path as the argument passed in.
class	NameElementRange	Constructs a Path from a sub-range of the name-elements of the Path.

Uses of DerivePath in org.anchoranalysis.mpp.io.bean.input

Methods in org.anchoranalysis.mpp.io.bean.input that return types with arguments of type DerivePath

Modifier and Type	Method	Description
List<NamedBean<DerivePath>>	MultiInputManager.getAppendDictionary()	List of dictionaries to append.
List<NamedBean<DerivePath>>	MultiInputManager.getAppendFilePath()	List of file paths to append.
List<NamedBean<DerivePath>>	MultiInputManager.getAppendHistogram()	List of histograms to append.
List<NamedBean<DerivePath>>	MultiInputManager.getAppendMarks()	List of marks to append.
List<NamedBean<DerivePath>>	MultiInputManager.getAppendMarksFromAnnotation()	List of marks from annotations (both accepted and rejected) to append.
List<NamedBean<DerivePath>>	MultiInputManager.getAppendMarksFromAnnotationAcceptedOnly()	List of marks from annotations (accepted only) to append.
List<NamedBean<DerivePath>>	MultiInputManager.getAppendMarksFromAnnotationRejectedOnly()	List of marks from annotations (rejected only) to append.
List<NamedBean<DerivePath>>	MultiInputManager.getAppendObjects()	List of object-collections to append to the MultiInput.
List<NamedBean<DerivePath>>	MultiInputManager.getAppendStack()	List of additional stacks to append.

Method parameters in org.anchoranalysis.mpp.io.bean.input with type arguments of type DerivePath

Modifier and Type	Method	Description
void	MultiInputManager.setAppendDictionary(List<NamedBean<DerivePath>> appendDictionary)	List of dictionaries to append.
void	MultiInputManager.setAppendFilePath(List<NamedBean<DerivePath>> appendFilePath)	List of file paths to append.
void	MultiInputManager.setAppendHistogram(List<NamedBean<DerivePath>> appendHistogram)	List of histograms to append.
void	MultiInputManager.setAppendMarks(List<NamedBean<DerivePath>> appendMarks)	List of marks to append.
void	MultiInputManager.setAppendMarksFromAnnotation(List<NamedBean<DerivePath>> appendMarksFromAnnotation)	List of marks from annotations (both accepted and rejected) to append.
void	MultiInputManager.setAppendMarksFromAnnotationAcceptedOnly(List<NamedBean<DerivePath>> appendMarksFromAnnotationAcceptedOnly)	List of marks from annotations (accepted only) to append.
void	MultiInputManager.setAppendMarksFromAnnotationRejectedOnly(List<NamedBean<DerivePath>> appendMarksFromAnnotationRejectedOnly)	List of marks from annotations (rejected only) to append.
void	MultiInputManager.setAppendObjects(List<NamedBean<DerivePath>> appendObjects)	List of object-collections to append to the MultiInput.
void	MultiInputManager.setAppendStack(List<NamedBean<DerivePath>> appendStack)	List of additional stacks to append.

Uses of DerivePath in org.anchoranalysis.plugin.annotation.bean.comparer

Methods in org.anchoranalysis.plugin.annotation.bean.comparer that return DerivePath

Modifier and Type	Method	Description
DerivePath	MaskAsObject.getDerivePath()	Where to find the Mask to compare, as a function of the source file-path.
DerivePath	Objects.getDerivePath()	Where to find the objects to compare, as a function of the source file-path.

Methods in org.anchoranalysis.plugin.annotation.bean.comparer with parameters of type DerivePath

Modifier and Type	Method	Description
void	MaskAsObject.setDerivePath(DerivePath derivePath)	Where to find the Mask to compare, as a function of the source file-path.
void	Objects.setDerivePath(DerivePath derivePath)	Where to find the objects to compare, as a function of the source file-path.

Uses of DerivePath in org.anchoranalysis.plugin.annotation.bean.strategy

Methods in org.anchoranalysis.plugin.annotation.bean.strategy that return DerivePath

Modifier and Type	Method	Description
DerivePath	SinglePathStrategy.getPathAnnotation()	Derives the path to the corresponding annotation files, given a path to the image to be annotated.
DerivePath	MarkProposerStrategy.getPathDefaultMarks()	Path to derive default marks from.
DerivePath	MarkProposerStrategy.getPathDictionary()	Path to derive dictionary from.

Methods in org.anchoranalysis.plugin.annotation.bean.strategy that return types with arguments of type DerivePath

Modifier and Type	Method	Description
Optional<DerivePath>	MarkProposerStrategy.dictionaryDeriver()	Gets the dictionary deriver path if set.
List<DerivePath>	MarkProposerStrategy.getAdditionalBackgrounds()	Additional background-stacks that are possible to use while annotating.
Optional<DerivePath>	MarkProposerStrategy.marksDeriver()	Gets the marks deriver path if set.

Methods in org.anchoranalysis.plugin.annotation.bean.strategy with parameters of type DerivePath

Modifier and Type	Method	Description
static Path	PathFromGenerator.derivePath(DerivePath generator, Path pathForBinding)	Derives a path using a DerivePath generator and a binding path.
void	SinglePathStrategy.setPathAnnotation(DerivePath pathAnnotation)	Derives the path to the corresponding annotation files, given a path to the image to be annotated.
void	MarkProposerStrategy.setPathDefaultMarks(DerivePath pathDefaultMarks)	Path to derive default marks from.
void	MarkProposerStrategy.setPathDictionary(DerivePath pathDictionary)	Path to derive dictionary from.

Method parameters in org.anchoranalysis.plugin.annotation.bean.strategy with type arguments of type DerivePath

Modifier and Type	Method	Description
void	MarkProposerStrategy.setAdditionalBackgrounds(List<DerivePath> additionalBackgrounds)	Additional background-stacks that are possible to use while annotating.

Uses of DerivePath in org.anchoranalysis.plugin.image.task.bean.feature

Methods in org.anchoranalysis.plugin.image.task.bean.feature that return DerivePath

Modifier and Type	Method	Description
DerivePath	ExportFeatures.getId()	Translates an input file name to a unique ID.

Methods in org.anchoranalysis.plugin.image.task.bean.feature with parameters of type DerivePath

Modifier and Type	Method	Description
void	ExportFeatures.setId(DerivePath id)	Translates an input file name to a unique ID.

Uses of DerivePath in org.anchoranalysis.plugin.image.task.bean.labeller

Methods in org.anchoranalysis.plugin.image.task.bean.labeller that return DerivePath

Modifier and Type	Method	Description
DerivePath	ImageCSVLabeller.getPathLabel()	Path to a CSV label file (comma-separated, with header, no quotes).

Methods in org.anchoranalysis.plugin.image.task.bean.labeller with parameters of type DerivePath

Modifier and Type	Method	Description
void	ImageCSVLabeller.setPathLabel(DerivePath pathLabel)	Path to a CSV label file (comma-separated, with header, no quotes).

Uses of DerivePath in org.anchoranalysis.plugin.io.bean.grouper

Methods in org.anchoranalysis.plugin.io.bean.grouper that return DerivePath

Modifier and Type	Method	Description
protected DerivePath	RemoveLastElement.selectDerivePath()

Uses of DerivePath in org.anchoranalysis.plugin.io.bean.input.channel

Methods in org.anchoranalysis.plugin.io.bean.input.channel that return types with arguments of type DerivePath

Modifier and Type	Method	Description
List<NamedBean<DerivePath>>	NamedChannelsAppend.getListAppend()

Method parameters in org.anchoranalysis.plugin.io.bean.input.channel with type arguments of type DerivePath

Modifier and Type	Method	Description
void	NamedChannelsAppend.setListAppend(List<NamedBean<DerivePath>> listAppend)

Uses of DerivePath in org.anchoranalysis.plugin.io.bean.input.files.provider

Methods in org.anchoranalysis.plugin.io.bean.input.files.provider that return types with arguments of type DerivePath

Modifier and Type	Method	Description
List<DerivePath>	FilterForExistingFiles.getPaths()	All files need to be present

Method parameters in org.anchoranalysis.plugin.io.bean.input.files.provider with type arguments of type DerivePath

Modifier and Type	Method	Description
void	FilterForExistingFiles.setPaths(List<DerivePath> paths)	All files need to be present

Uses of DerivePath in org.anchoranalysis.plugin.io.bean.input.filter

Methods in org.anchoranalysis.plugin.io.bean.input.filter that return DerivePath

Modifier and Type	Method	Description
DerivePath	FilterCSVColumn.getCsvFilePath()

Methods in org.anchoranalysis.plugin.io.bean.input.filter with parameters of type DerivePath

Modifier and Type	Method	Description
void	FilterCSVColumn.setCsvFilePath(DerivePath csvFilePath)

Uses of DerivePath in org.anchoranalysis.plugin.io.bean.path.derive

Subclasses of DerivePath in org.anchoranalysis.plugin.io.bean.path.derive

Modifier and Type	Class	Description
class	CollapseFileName	Removes the file-name from a path, but keeps the directories and preserves the file-extension.
class	Constant	Always generates a constant path irrespective of the the input
class	InsertRegExGroups	Generates an out string where $digit$ is replaced with the #digit group from a regex
class	JoinRegExGroups	Generates an outstring of the form
class	RemoveTrailingDirectory
class	Replace	Generates a file-path by replacing all occurrences of a string-pattern with another
class	Rooted

Methods in org.anchoranalysis.plugin.io.bean.path.derive that return DerivePath

Modifier and Type	Method	Description
DerivePath	CollapseFileName.getDerivePath()	Called as a delegate to provide a source Path.
DerivePath	RemoveTrailingDirectory.getDerivePath()
DerivePath	Rooted.getItem()

Methods in org.anchoranalysis.plugin.io.bean.path.derive with parameters of type DerivePath

Modifier and Type	Method	Description
void	CollapseFileName.setDerivePath(DerivePath derivePath)	Called as a delegate to provide a source Path.
void	RemoveTrailingDirectory.setDerivePath(DerivePath derivePath)
void	Rooted.setItem(DerivePath item)