Uses of Class
org.anchoranalysis.io.input.file.NamedFile

Packages that use NamedFile

Package	Description
org.anchoranalysis.image.io.stack.input	Non-bean classes for reading a Stack from the filesystem.
org.anchoranalysis.io.input	Classes relating to creating inputs for an experiment / task.
org.anchoranalysis.io.input.bean.namer	Beans to derive names (compact unique identifiers) from files.
org.anchoranalysis.io.input.file	Non-bean classes that relate to using files during inputting.
org.anchoranalysis.plugin.io.bean.file.namer	Implementations of FileNamer.
org.anchoranalysis.plugin.io.bean.file.namer.patternspan	Implementations of FileNamer that look for a pattern across many files.
org.anchoranalysis.plugin.io.bean.input.files	InputManagers that accept a set of named-files.

Uses of NamedFile in org.anchoranalysis.image.io.stack.input

Constructors in org.anchoranalysis.image.io.stack.input with parameters of type NamedFile

Modifier	Constructor	Description
	ImageMetadataInput(NamedFile file, CheckedSupplier<ImageMetadata,ImageIOException> metadata)	Create for a particular file and metadata.

Uses of NamedFile in org.anchoranalysis.io.input

Methods in org.anchoranalysis.io.input that return NamedFile

Modifier and Type	Method	Description
default NamedFile	InputFromManager.asFile()	Expresses the input as a file with a name (the unique identifier).

Methods in org.anchoranalysis.io.input that return types with arguments of type NamedFile

Modifier and Type	Method	Description
Collection<NamedFile>	InputsWithDirectory.findAllNonInputFiles()	Find all files in the input directory are not used as inputs.

Uses of NamedFile in org.anchoranalysis.io.input.bean.namer

Methods in org.anchoranalysis.io.input.bean.namer that return NamedFile

Modifier and Type	Method	Description
NamedFile	FileNamer.deriveName(File file, FileNamerContext context)	A name for a file.

Methods in org.anchoranalysis.io.input.bean.namer that return types with arguments of type NamedFile

Modifier and Type	Method	Description
abstract List<NamedFile>	FileNamer.deriveName(List<File> files, FileNamerContext context)	Derives a list of names (associated with each file) for some files.
List<NamedFile>	FileNamerIndependent.deriveName(List<File> files, FileNamerContext context)
List<NamedFile>	FileNamer.deriveNameUnique(List<File> files, FileNamerContext context)	Like FileNamer.deriveName(List, FileNamerContext) but checks that the final list of named-files all have unique names.

Uses of NamedFile in org.anchoranalysis.io.input.file

Methods in org.anchoranalysis.io.input.file that return NamedFile

Modifier and Type	Method	Description
NamedFile	NamedFile.mapIdentifier(BiFunction<String,File,String> function)	Immutably renames the file, by assigning it a new identifier.

Constructors in org.anchoranalysis.io.input.file with parameters of type NamedFile

Modifier	Constructor	Description
	FileInput(NamedFile file)	Creates for a single file.
	FileWithDirectoryInput(NamedFile file, Path directory)	Create for a particular file and directory.
protected	SingleFileInputBase(NamedFile file)	Creates for a particular file.

Uses of NamedFile in org.anchoranalysis.plugin.io.bean.file.namer

Methods in org.anchoranalysis.plugin.io.bean.file.namer that return types with arguments of type NamedFile

Modifier and Type	Method	Description
List<NamedFile>	IfRelativeToDirectory.deriveName(List<File> files, FileNamerContext context)
List<NamedFile>	RemoveExtension.deriveName(List<File> files, FileNamerContext context)
List<NamedFile>	SubsetRangeIfRequested.deriveName(List<File> files, FileNamerContext context)

Uses of NamedFile in org.anchoranalysis.plugin.io.bean.file.namer.patternspan

Methods in org.anchoranalysis.plugin.io.bean.file.namer.patternspan that return types with arguments of type NamedFile

Modifier and Type	Method	Description
List<NamedFile>	PatternSpan.deriveName(List<File> files, FileNamerContext context)

Uses of NamedFile in org.anchoranalysis.plugin.io.bean.input.files

Method parameters in org.anchoranalysis.plugin.io.bean.input.files with type arguments of type NamedFile

Modifier and Type	Method	Description
protected InputsWithDirectory<T>	NamedFilesBase.createInputsFromFiles(FilesProvider files, InputManagerParameters parameters, Function<NamedFile,T> mapToInput)	Creates a list of inputs from a FilesProvider which together with the namer can create the inputs.