Package | Description |
---|---|
org.anchoranalysis.io.output.bean.path.prefixer |
Beans for generating paths for outputting files by adding a prefix, suffix etc.
|
org.anchoranalysis.io.output.outputter |
Classes for outputting to particular directories.
|
org.anchoranalysis.io.output.outputter.directory |
BoundDirectory and related classes. |
org.anchoranalysis.plugin.io.bean.file.copy.naming |
Rules for preserving or changing the naming of files when copying on the file-system.
|
org.anchoranalysis.plugin.io.bean.file.copy.naming.cluster |
Implementations of
CopyFilesNaming
that perform clustering of files. |
org.anchoranalysis.plugin.io.bean.file.path.prefixer |
Implementations of
PathPrefixer . |
org.anchoranalysis.plugin.quick.bean.structure |
Specifying a structure of subdirectories and filenames when quickly defining an experiment.
|
Modifier and Type | Method and Description |
---|---|
DirectoryWithPrefix |
PathPrefixerAvoidResolve.outFilePrefix(NamedPath path,
Optional<String> experimentIdentifier,
PathPrefixerContext context) |
abstract DirectoryWithPrefix |
PathPrefixer.outFilePrefix(NamedPath path,
Optional<String> experimentIdentifier,
PathPrefixerContext context)
Provides a prefix which can be prepended to all output files.
|
DirectoryWithPrefix |
PathPrefixerAvoidResolve.outFilePrefixAvoidResolve(NamedPath path,
Optional<String> experimentIdentifier,
PathPrefixerContext context)
Provides a prefix which can be prepended to all output files.
|
abstract DirectoryWithPrefix |
PathPrefixerAvoidResolve.outFilePrefixFromPath(NamedPath path,
Path root,
PathPrefixerContext context)
Determines the out-file prefix from a path
|
DirectoryWithPrefix |
IncrementingNumber.outFilePrefixFromPath(NamedPath path,
Path root,
PathPrefixerContext context) |
DirectoryWithPrefix |
PathPrefixerAvoidResolve.rootDirectoryPrefix(Optional<String> experimentIdentifier,
PathPrefixerContext context) |
abstract DirectoryWithPrefix |
PathPrefixer.rootDirectoryPrefix(Optional<String> experimentIdentifier,
PathPrefixerContext context)
Provides a prefix that becomes the root-folder.
|
DirectoryWithPrefix |
PathPrefixerAvoidResolve.rootDirectoryPrefixAvoidResolve(Optional<String> experimentIdentifier)
Provides a prefix that becomes the root-folder.
|
Modifier and Type | Method and Description |
---|---|
DirectoryWithPrefix |
Outputter.getPrefix() |
DirectoryWithPrefix |
OutputterChecked.getPrefix() |
Modifier and Type | Method and Description |
---|---|
OutputterChecked |
OutputterChecked.changePrefix(DirectoryWithPrefix prefixToAssign)
Creates a
OutputterChecked with a changed prefix. |
static OutputterChecked |
OutputterChecked.createWithPrefix(DirectoryWithPrefix prefix,
MultiLevelOutputEnabled outputEnabled,
OutputWriteContext context,
Optional<MultiLevelRecordedOutputs> recordedOutputs,
DirectoryCreationParameters directoryCreation,
Optional<Logger> logger)
Creates a bound output-manager from an existing
OutputManager with a prefix. |
Modifier and Type | Method and Description |
---|---|
DirectoryWithPrefix |
OutputterTarget.getPrefix() |
Modifier and Type | Method and Description |
---|---|
OutputterTarget |
OutputterTarget.changePrefix(DirectoryWithPrefix prefixToAssign)
Creates a new
OutputterTarget with a changed prefix. |
Constructor and Description |
---|
OutputterTarget(DirectoryWithPrefix directory,
DirectoryCreationParameters parameters)
Creates for a particular directory, with optionally an associated prefix.
|
Modifier and Type | Method and Description |
---|---|
Optional<Path> |
CopyFilesNaming.destinationPath(File file,
DirectoryWithPrefix outputTarget,
int index,
CopyContext<T> context)
Returns the output path (destination to to be copied to) for a given single file.
|
Optional<Path> |
Anonymize.destinationPathRelative(File file,
DirectoryWithPrefix outputTarget,
int iter,
CopyContext<AnonymizeSharedState> context) |
Optional<Path> |
PreserveName.destinationPathRelative(File file,
DirectoryWithPrefix outputTarget,
int iter,
CopyContext<NoSharedState> context) |
Optional<Path> |
CopyFilesNamingOne.destinationPathRelative(File file,
DirectoryWithPrefix outputTarget,
int iter,
CopyContext<NoSharedState> context) |
Optional<Path> |
OutputPrefixWithExtension.destinationPathRelative(File file,
DirectoryWithPrefix outputTarget,
int index,
CopyContext<NoSharedState> context) |
abstract Optional<Path> |
CopyFilesNaming.destinationPathRelative(File file,
DirectoryWithPrefix outputTarget,
int index,
CopyContext<T> context)
Calculates the relative-output path (to be appended to destDir)
|
Modifier and Type | Method and Description |
---|---|
Optional<Path> |
ClusterByTimestamp.destinationPathRelative(File file,
DirectoryWithPrefix outputTarget,
int index,
CopyContext<ClusterMembership> context) |
Modifier and Type | Method and Description |
---|---|
DirectoryWithPrefix |
ExperimentStructure.outFilePrefix(NamedPath path,
Optional<String> experimentIdentifier,
PathPrefixerContext context) |
DirectoryWithPrefix |
ExperimentStructure.rootDirectoryPrefix(Optional<String> experimentIdentifier,
PathPrefixerContext context) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.