Uses of Class
org.anchoranalysis.io.output.path.prefixer.DirectoryWithPrefix

Packages that use DirectoryWithPrefix

Package	Description
org.anchoranalysis.io.output.bean.path.prefixer	Beans for generating paths for outputting files by adding a prefix, suffix etc.
org.anchoranalysis.io.output.outputter	Classes for outputting to particular directories.
org.anchoranalysis.io.output.outputter.directory	BoundDirectory and related classes.
org.anchoranalysis.plugin.io.bean.file.copy.naming	Rules for preserving or changing the naming of files when copying on the file-system.
org.anchoranalysis.plugin.io.bean.file.copy.naming.cluster	Implementations of CopyFilesNaming that perform clustering of files.
org.anchoranalysis.plugin.io.bean.file.path.prefixer	Implementations of PathPrefixer.

Uses of DirectoryWithPrefix in org.anchoranalysis.io.output.bean.path.prefixer

Methods in org.anchoranalysis.io.output.bean.path.prefixer that return DirectoryWithPrefix

Modifier and Type	Method	Description
abstract DirectoryWithPrefix	PathPrefixer.outFilePrefix(NamedPath path, Optional<String> experimentIdentifier, PathPrefixerContext context)	Provides a prefix which can be prepended to all output files.
DirectoryWithPrefix	PathPrefixerAvoidResolve.outFilePrefix(NamedPath path, Optional<String> experimentIdentifier, PathPrefixerContext context)
DirectoryWithPrefix	PathPrefixerAvoidResolve.outFilePrefixAvoidResolve(NamedPath path, Optional<String> experimentIdentifier, PathPrefixerContext context)	Provides a prefix which can be prepended to all output files.
DirectoryWithPrefix	IncrementingNumber.outFilePrefixFromPath(NamedPath path, Path root, PathPrefixerContext context)
abstract DirectoryWithPrefix	PathPrefixerAvoidResolve.outFilePrefixFromPath(NamedPath path, Path root, PathPrefixerContext context)	Determines the out-file prefix from a path.
abstract DirectoryWithPrefix	PathPrefixer.rootDirectoryPrefix(Optional<String> experimentIdentifier, PathPrefixerContext context)	Provides a prefix that becomes the root-folder.
DirectoryWithPrefix	PathPrefixerAvoidResolve.rootDirectoryPrefix(Optional<String> experimentIdentifier, PathPrefixerContext context)
DirectoryWithPrefix	PathPrefixerAvoidResolve.rootDirectoryPrefixAvoidResolve(Optional<String> experimentIdentifier)	Provides a prefix that becomes the root-folder.

Uses of DirectoryWithPrefix in org.anchoranalysis.io.output.outputter

Methods in org.anchoranalysis.io.output.outputter that return DirectoryWithPrefix

Modifier and Type	Method	Description
DirectoryWithPrefix	Outputter.getPrefix()	The directory and prefix into which outputting occurs.
DirectoryWithPrefix	OutputterChecked.getPrefix()	The directory and prefix into which outputting occurs.

Methods in org.anchoranalysis.io.output.outputter with parameters of type DirectoryWithPrefix

Modifier and Type	Method	Description
OutputterChecked	OutputterChecked.changePrefix(DirectoryWithPrefix prefixToAssign)	Creates a OutputterChecked with a changed prefix.
static OutputterChecked	OutputterChecked.createWithPrefix(DirectoryWithPrefix prefix, MultiLevelOutputEnabled outputEnabled, OutputWriteContext context, Optional<MultiLevelRecordedOutputs> recordedOutputs, DirectoryCreationParameters directoryCreation, Optional<Logger> logger)	Creates a bound output-manager from an existing OutputManager with a prefix.

Uses of DirectoryWithPrefix in org.anchoranalysis.io.output.outputter.directory

Methods in org.anchoranalysis.io.output.outputter.directory that return DirectoryWithPrefix

Modifier and Type	Method	Description
DirectoryWithPrefix	OutputterTarget.getPrefix()	The directory and prefix into which outputting occurs.

Methods in org.anchoranalysis.io.output.outputter.directory with parameters of type DirectoryWithPrefix

Modifier and Type	Method	Description
OutputterTarget	OutputterTarget.changePrefix(DirectoryWithPrefix prefixToAssign)	Creates a new OutputterTarget with a changed prefix.

Constructors in org.anchoranalysis.io.output.outputter.directory with parameters of type DirectoryWithPrefix

Modifier	Constructor	Description
	OutputterTarget(DirectoryWithPrefix directory, DirectoryCreationParameters parameters)	Creates for a particular directory, with optionally an associated prefix.

Uses of DirectoryWithPrefix in org.anchoranalysis.plugin.io.bean.file.copy.naming

Methods in org.anchoranalysis.plugin.io.bean.file.copy.naming with parameters of type DirectoryWithPrefix

Modifier and Type	Method	Description
Optional<Path>	CopyFilesNaming.destinationPath(File file, DirectoryWithPrefix outputTarget, int index, CopyContext<T> context)	Returns the output path (destination to to be copied to) for a given single file.
Optional<Path>	Anonymize.destinationPathRelative(File file, DirectoryWithPrefix outputTarget, int iter, CopyContext<AnonymizeSharedState> context)
abstract Optional<Path>	CopyFilesNaming.destinationPathRelative(File file, DirectoryWithPrefix outputTarget, int index, CopyContext<T> context)	Calculates the relative-output path (to be appended to destDir)
Optional<Path>	CopyFilesNamingOne.destinationPathRelative(File file, DirectoryWithPrefix outputTarget, int iter, CopyContext<NoSharedState> context)
Optional<Path>	OutputPrefixWithExtension.destinationPathRelative(File file, DirectoryWithPrefix outputTarget, int index, CopyContext<NoSharedState> context)
Optional<Path>	PreserveName.destinationPathRelative(File file, DirectoryWithPrefix outputTarget, int iter, CopyContext<NoSharedState> context)

Uses of DirectoryWithPrefix in org.anchoranalysis.plugin.io.bean.file.copy.naming.cluster

Methods in org.anchoranalysis.plugin.io.bean.file.copy.naming.cluster with parameters of type DirectoryWithPrefix

Modifier and Type	Method	Description
Optional<Path>	ClusterByTimestamp.destinationPathRelative(File file, DirectoryWithPrefix outputTarget, int index, CopyContext<ClusterMembership> context)

Uses of DirectoryWithPrefix in org.anchoranalysis.plugin.io.bean.file.path.prefixer

Methods in org.anchoranalysis.plugin.io.bean.file.path.prefixer that return DirectoryWithPrefix

Modifier and Type	Method	Description
DirectoryWithPrefix	HomeSubdirectory.outFilePrefix(NamedPath path, Optional<String> expName, PathPrefixerContext context)
DirectoryWithPrefix	Rooted.outFilePrefix(NamedPath path, Optional<String> experimentName, PathPrefixerContext context)
DirectoryWithPrefix	DirectoryStructure.outFilePrefixFromPath(NamedPath path, Path root, PathPrefixerContext context)
DirectoryWithPrefix	FromDescriptiveName.outFilePrefixFromPath(NamedPath path, Path root, PathPrefixerContext context)
DirectoryWithPrefix	IfIncrementingNumberRequested.outFilePrefixFromPath(NamedPath path, Path root, PathPrefixerContext context)
DirectoryWithPrefix	LastDirectoryAsPrefix.outFilePrefixFromPath(NamedPath path, Path root, PathPrefixerContext context)
DirectoryWithPrefix	PathRegEx.outFilePrefixFromPath(NamedPath path, Path root, PathPrefixerContext context)
DirectoryWithPrefix	HomeSubdirectory.rootDirectoryPrefix(Optional<String> expName, PathPrefixerContext context)
DirectoryWithPrefix	Rooted.rootDirectoryPrefix(Optional<String> expName, PathPrefixerContext context)