Package org.anchoranalysis.mpp.feature.bean.energy.scheme

Class EnergySchemeCreatorByElement

Object

AnchorBean<EnergySchemeCreator>

InitializableBean<EnergySchemeCreator,FeatureRelatedInitialization>

FeatureRelatedBean<EnergySchemeCreator>

EnergySchemeCreator

EnergySchemeCreatorByElement

public class EnergySchemeCreatorByElement
extends EnergySchemeCreator

Creates an EnergyScheme by combining individual elements and their interactions.

Constructor Summary

Constructors

Constructor	Description
EnergySchemeCreatorByElement()

Method Summary

Modifier and Type	Method	Description
EnergyScheme	create()	Creates an EnergyScheme instance.
DictionaryProvider	getDictionary()	Optional dictionary provider.
FeatureListProvider<FeatureInputAllMemo>	getElemAllCreator()	Optional creator for features considering all elements.
FeatureListProvider<FeatureInputSingleMemo>	getElemIndCreator()	Creates features for individual elements.
FeatureListProvider<FeatureInputPairMemo>	getElemPairCreator()	Creates features for pairs of elements.
List<NamedBean<FeatureListProvider<FeatureInputStack>>>	getListImageFeatures()	List of named feature providers for image-based features.
AddCriteriaPair	getPairAddCriteria()	Criteria for adding pairs of elements.
RegionMap	getRegionMap()	Mapping of regions.
boolean	isIncludeFeatureNames()	If true, the names of the imageFeatures are taken as a combination of the namedItem and the actual features.
void	setDictionary(DictionaryProvider dictionary)	Optional dictionary provider.
void	setElemAllCreator(FeatureListProvider<FeatureInputAllMemo> elemAllCreator)	Optional creator for features considering all elements.
void	setElemIndCreator(FeatureListProvider<FeatureInputSingleMemo> elemIndCreator)	Creates features for individual elements.
void	setElemPairCreator(FeatureListProvider<FeatureInputPairMemo> elemPairCreator)	Creates features for pairs of elements.
void	setIncludeFeatureNames(boolean includeFeatureNames)	If true, the names of the imageFeatures are taken as a combination of the namedItem and the actual features.
void	setListImageFeatures(List<NamedBean<FeatureListProvider<FeatureInputStack>>> listImageFeatures)	List of named feature providers for image-based features.
void	setPairAddCriteria(AddCriteriaPair pairAddCriteria)	Criteria for adding pairs of elements.
void	setRegionMap(RegionMap regionMap)	Mapping of regions.

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

EnergySchemeCreatorByElement

public EnergySchemeCreatorByElement()

Method Details

create

public EnergyScheme create()
                    throws CreateException

Description copied from class: EnergySchemeCreator

Creates an EnergyScheme instance.

Specified by:

create in class EnergySchemeCreator

Returns:

a new EnergyScheme object

Throws:

CreateException - if there's an error during the creation process

getElemIndCreator

public FeatureListProvider<FeatureInputSingleMemo> getElemIndCreator()

Creates features for individual elements.

setElemIndCreator

public void setElemIndCreator(FeatureListProvider<FeatureInputSingleMemo> elemIndCreator)

Creates features for individual elements.

getElemPairCreator

public FeatureListProvider<FeatureInputPairMemo> getElemPairCreator()

Creates features for pairs of elements.

setElemPairCreator

public void setElemPairCreator(FeatureListProvider<FeatureInputPairMemo> elemPairCreator)

Creates features for pairs of elements.

getElemAllCreator

public FeatureListProvider<FeatureInputAllMemo> getElemAllCreator()

Optional creator for features considering all elements.

setElemAllCreator

public void setElemAllCreator(FeatureListProvider<FeatureInputAllMemo> elemAllCreator)

Optional creator for features considering all elements.

getListImageFeatures

public List<NamedBean<FeatureListProvider<FeatureInputStack>>> getListImageFeatures()

List of named feature providers for image-based features.

setListImageFeatures

public void setListImageFeatures(List<NamedBean<FeatureListProvider<FeatureInputStack>>> listImageFeatures)

List of named feature providers for image-based features.

getPairAddCriteria

public AddCriteriaPair getPairAddCriteria()

Criteria for adding pairs of elements.

setPairAddCriteria

public void setPairAddCriteria(AddCriteriaPair pairAddCriteria)

Criteria for adding pairs of elements.

getRegionMap

public RegionMap getRegionMap()

Mapping of regions.

setRegionMap

public void setRegionMap(RegionMap regionMap)

Mapping of regions.

getDictionary

public DictionaryProvider getDictionary()

Optional dictionary provider.

setDictionary

public void setDictionary(DictionaryProvider dictionary)

Optional dictionary provider.

isIncludeFeatureNames

public boolean isIncludeFeatureNames()

If true, the names of the imageFeatures are taken as a combination of the namedItem and the actual features.

setIncludeFeatureNames

public void setIncludeFeatureNames(boolean includeFeatureNames)

If true, the names of the imageFeatures are taken as a combination of the namedItem and the actual features.