Package org.anchoranalysis.plugin.fiji.bean.channel.provider

Class AnisotropicDiffusion

Object

AnchorBean<ChannelProvider>

InitializableBean<ChannelProvider,ImageInitialization>

ImageBean<ChannelProvider>

BeanProviderAsStackBase<ChannelProvider,Channel>

ChannelProvider

ChannelProviderUnary

AnisotropicDiffusion

All Implemented Interfaces:

Provider<Channel>, ProviderAsStack

public class AnisotropicDiffusion
extends ChannelProviderUnary

Performs Perona-Malik Anisotropic Diffusion.

See the ImgLib2 plugin documentation.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
AnisotropicDiffusion()

Method Summary

Modifier and Type	Method	Description
Channel	createFromChannel(Channel channel)	Creates a Channel given the entity provided by the delegate.
double	getDeltat()	the integration constant for the numerical integration scheme.
int	getIterations()	How many iterations to perform diffusion.
double	getKappa()	A parameter kappa associated with the diffusion functions.
boolean	isDo3D()	Whether to perform the diffusion in 3D direction, or rather only in the 2D plane.
boolean	isStrongEdgeEnhancer()	If true uses, the strong-edge-enhancer diffusion function, otherwise the wide-region-enhancer.
void	setDeltat(double deltat)	the integration constant for the numerical integration scheme.
void	setDo3D(boolean do3D)	Whether to perform the diffusion in 3D direction, or rather only in the 2D plane.
void	setIterations(int iterations)	How many iterations to perform diffusion.
void	setKappa(double kappa)	A parameter kappa associated with the diffusion functions.
void	setStrongEdgeEnhancer(boolean strongEdgeEnhancer)	If true uses, the strong-edge-enhancer diffusion function, otherwise the wide-region-enhancer.

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

get, getChannel, setChannel

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

AnisotropicDiffusion

public AnisotropicDiffusion()

Method Details

createFromChannel

public Channel createFromChannel(Channel channel)
                          throws ProvisionFailedException

Description copied from class: ChannelProviderUnary

Creates a Channel given the entity provided by the delegate.

Specified by:

createFromChannel in class ChannelProviderUnary

Parameters:

channel - the entity provided by the delegate.

Returns:

the created Channel that is returned by the provider.

Throws:

ProvisionFailedException - if the provider cannot complete successfully.

getKappa

public double getKappa()

A parameter kappa associated with the diffusion functions.

setKappa

public void setKappa(double kappa)

A parameter kappa associated with the diffusion functions.

getDeltat

public double getDeltat()

the integration constant for the numerical integration scheme. Typically less that 1.

setDeltat

public void setDeltat(double deltat)

the integration constant for the numerical integration scheme. Typically less that 1.

isDo3D

public boolean isDo3D()

Whether to perform the diffusion in 3D direction, or rather only in the 2D plane.

setDo3D

public void setDo3D(boolean do3D)

Whether to perform the diffusion in 3D direction, or rather only in the 2D plane.

getIterations

public int getIterations()

How many iterations to perform diffusion.

setIterations

public void setIterations(int iterations)

How many iterations to perform diffusion.

isStrongEdgeEnhancer

public boolean isStrongEdgeEnhancer()

If true uses, the strong-edge-enhancer diffusion function, otherwise the wide-region-enhancer.

setStrongEdgeEnhancer

public void setStrongEdgeEnhancer(boolean strongEdgeEnhancer)

If true uses, the strong-edge-enhancer diffusion function, otherwise the wide-region-enhancer.