Package org.anchoranalysis.plugin.fiji.bean.mask.provider

Class AutoLocalThreshold

Object

AnchorBean<MaskProvider>

InitializableBean<MaskProvider,ImageInitialization>

ImageBean<MaskProvider>

BeanProviderAsStackBase<MaskProvider,Mask>

MaskProvider

FromChannelBase

AutoLocalThreshold

All Implemented Interfaces:

Provider<Mask>, ProviderAsStack

public class AutoLocalThreshold
extends FromChannelBase

Applies local thresholding algorithm using Fiji's {link Auto_Local_Threshold} plugin

The thresholding procedure it applied to each slice independently.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
AutoLocalThreshold()

Method Summary

Modifier and Type	Method	Description
protected Mask	createFromSource(Channel channel)	Creates a Mask from the source Channel.
String	getMethod()
int	getRadius()
void	setMethod(String method)
void	setRadius(int radius)

Methods inherited from class org.anchoranalysis.plugin.image.bean.mask.provider.FromChannelBase

get, getChannel, setChannel

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

AutoLocalThreshold

public AutoLocalThreshold()

Method Details

createFromSource

protected Mask createFromSource(Channel channel)
                         throws CreateException

Description copied from class: FromChannelBase

Creates a Mask from the source Channel.

Specified by:

createFromSource in class FromChannelBase

Parameters:

channel - the source channel

Returns:

the created mask

Throws:

CreateException - if the mask creation fails

getMethod

public String getMethod()

setMethod

public void setMethod(String method)

getRadius

public int getRadius()

setRadius

public void setRadius(int radius)