Package org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic

Class SubtractMean

Object

AnchorBean<ChannelProvider>

InitializableBean<ChannelProvider,ImageInitialization>

ImageBean<ChannelProvider>

BeanProviderAsStackBase<ChannelProvider,Channel>

ChannelProvider

ChannelProviderUnary

UnaryWithMaskBase

SubtractMean

All Implemented Interfaces:

Provider<Channel>, ProviderAsStack

public class SubtractMean
extends UnaryWithMaskBase

Subtracts the mean intensity (of the entire channel or a masked portion thereof) from every voxel.

This class extends UnaryWithMaskBase to perform mean subtraction on a channel, optionally restricted to a masked region.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
SubtractMean()

Method Summary

Modifier and Type	Method	Description
protected Channel	createFromMaskedChannel(Channel channel, Mask mask)	Creates a new Channel from the input channel and mask.
boolean	isSubtractFromMaskOnly()	Whether to subtract the mean only from voxels within the mask.
void	setSubtractFromMaskOnly(boolean subtractFromMaskOnly)	Whether to subtract the mean only from voxels within the mask.

Methods inherited from class org.anchoranalysis.plugin.image.bean.channel.provider.mask.UnaryWithMaskBase

createFromChannel, getMask, setMask

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

get, getChannel, setChannel

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

SubtractMean

public SubtractMean()

Method Details

createFromMaskedChannel

protected Channel createFromMaskedChannel(Channel channel,
 Mask mask)

Description copied from class: UnaryWithMaskBase

Creates a new Channel from the input channel and mask.

Specified by:

createFromMaskedChannel in class UnaryWithMaskBase

Parameters:

channel - the input Channel

mask - the Mask to apply to the channel

Returns:

a new Channel created from the input channel and mask

isSubtractFromMaskOnly

public boolean isSubtractFromMaskOnly()

Whether to subtract the mean only from voxels within the mask.

If true, only voxels within the mask are modified. If false, all voxels in the channel are modified.

setSubtractFromMaskOnly

public void setSubtractFromMaskOnly(boolean subtractFromMaskOnly)

Whether to subtract the mean only from voxels within the mask.

If true, only voxels within the mask are modified. If false, all voxels in the channel are modified.