Package org.anchoranalysis.plugin.image.bean.channel.provider.intensity

Class NormalizeDifferenceToMedian

Object

AnchorBean<ChannelProvider>

InitializableBean<ChannelProvider,ImageInitialization>

ImageBean<ChannelProvider>

BeanProviderAsStackBase<ChannelProvider,Channel>

ChannelProvider

ChannelProviderUnary

UnaryWithObjectsBase

NormalizeDifferenceToMedian

All Implemented Interfaces:

Provider<Channel>, ProviderAsStack

public class NormalizeDifferenceToMedian
extends UnaryWithObjectsBase

Corrects a channel in the following way

For each object:

1. Identify the median value from channelLookup (Value 1)
2. Calculate the difference of each pixel value in channelLookup (Value 2)
3. Adjust each pixel value by Value 2.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
NormalizeDifferenceToMedian()

Method Summary

Modifier and Type	Method	Description
protected Channel	createFromChannel(Channel channel, ObjectCollection objects)	Creates a new channel from an existing channel and a collection of objects.
ChannelProvider	getChannelLookup()
void	setChannelLookup(ChannelProvider channelLookup)

Methods inherited from class org.anchoranalysis.plugin.image.bean.channel.provider.UnaryWithObjectsBase

createFromChannel, getObjects, setObjects

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

get, getChannel, setChannel

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

NormalizeDifferenceToMedian

public NormalizeDifferenceToMedian()

Method Details

createFromChannel

protected Channel createFromChannel(Channel channel,
 ObjectCollection objects)
                             throws ProvisionFailedException

Description copied from class: UnaryWithObjectsBase

Creates a new channel from an existing channel and a collection of objects.

Specified by:

createFromChannel in class UnaryWithObjectsBase

Parameters:

channel - the input Channel

objects - the ObjectCollection to be used in channel creation

Returns:

a new Channel created from the input channel and objects

Throws:

ProvisionFailedException - if the channel creation fails

getChannelLookup

public ChannelProvider getChannelLookup()

setChannelLookup

public void setChannelLookup(ChannelProvider channelLookup)