Package org.anchoranalysis.plugin.image.bean.channel.provider.score

Class ScoreObjects

Object

AnchorBean<ChannelProvider>

InitializableBean<ChannelProvider,ImageInitialization>

ImageBean<ChannelProvider>

BeanProviderAsStackBase<ChannelProvider,Channel>

ChannelProvider

ChannelProviderUnary

UnaryWithObjectsBase

ScoreObjects

All Implemented Interfaces:

Provider<Channel>, ProviderAsStack

public class ScoreObjects
extends UnaryWithObjectsBase

Creates a channel by scoring objects based on a feature calculation.

This class assigns intensity values to voxels in a new channel based on feature calculations performed on objects in the input channel.

Constructor Summary

Constructors

Constructor	Description
ScoreObjects()

Method Summary

Modifier and Type	Method	Description
protected Channel	createFromChannel(Channel channel, ObjectCollection objects)	Creates a new channel from an existing channel and a collection of objects.
double	getFactor()	Factor to multiply the feature value by before assigning it to the output channel.
Feature<FeatureInputSingleObject>	getFeature()	Feature that calculates the score for an object.
List<ChannelProvider>	getListAdditionalChannelProviders()	Additional channels to be included in the EnergyStack for feature calculation.
int	getValueNoObject()	The value assigned to voxels that do not belong to any object.
void	setFactor(double factor)	Factor to multiply the feature value by before assigning it to the output channel.
void	setFeature(Feature<FeatureInputSingleObject> feature)	Feature that calculates the score for an object.
void	setListAdditionalChannelProviders(List<ChannelProvider> listAdditionalChannelProviders)	Additional channels to be included in the EnergyStack for feature calculation.
void	setValueNoObject(int valueNoObject)	The value assigned to voxels that do not belong to any object.

Methods inherited from class org.anchoranalysis.plugin.image.bean.channel.provider.UnaryWithObjectsBase

createFromChannel, getObjects, setObjects

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

get, getChannel, setChannel

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ScoreObjects

public ScoreObjects()

Method Details

createFromChannel

protected Channel createFromChannel(Channel channel,
 ObjectCollection objects)
                             throws ProvisionFailedException

Description copied from class: UnaryWithObjectsBase

Creates a new channel from an existing channel and a collection of objects.

Specified by:

createFromChannel in class UnaryWithObjectsBase

Parameters:

channel - the input Channel

objects - the ObjectCollection to be used in channel creation

Returns:

a new Channel created from the input channel and objects

Throws:

ProvisionFailedException - if the channel creation fails

getValueNoObject

public int getValueNoObject()

The value assigned to voxels that do not belong to any object.

setValueNoObject

public void setValueNoObject(int valueNoObject)

The value assigned to voxels that do not belong to any object.

getFeature

public Feature<FeatureInputSingleObject> getFeature()

Feature that calculates the score for an object.

setFeature

public void setFeature(Feature<FeatureInputSingleObject> feature)

Feature that calculates the score for an object.

getListAdditionalChannelProviders

public List<ChannelProvider> getListAdditionalChannelProviders()

Additional channels to be included in the EnergyStack for feature calculation.

setListAdditionalChannelProviders

public void setListAdditionalChannelProviders(List<ChannelProvider> listAdditionalChannelProviders)

Additional channels to be included in the EnergyStack for feature calculation.

getFactor

public double getFactor()

Factor to multiply the feature value by before assigning it to the output channel.

setFactor

public void setFactor(double factor)

Factor to multiply the feature value by before assigning it to the output channel.