Package org.anchoranalysis.plugin.image.bean.mask.provider.morphological

Class ExteriorContour

Object

AnchorBean<MaskProvider>

InitializableBean<MaskProvider,ImageInitialization>

ImageBean<MaskProvider>

BeanProviderAsStackBase<MaskProvider,Mask>

MaskProvider

MaskProviderUnary

ExteriorContour

All Implemented Interfaces:

Provider<Mask>, ProviderAsStack

public class ExteriorContour
extends MaskProviderUnary

Finds the exterior outer contour for a Mask that forms its outline.

It always creates a new mask for the result, without consuming the input.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
ExteriorContour()

Method Summary

Modifier and Type	Method	Description
Mask	createFromMask(Mask mask)	Creates a Mask given the entity provided by the delegate.
boolean	isFlatten()	If true, any 3D mask is flattened in the z-dimension (maximum intensity projection) to make it 2D
boolean	isOutlineAtBoundary()
void	setFlatten(boolean flatten)	If true, any 3D mask is flattened in the z-dimension (maximum intensity projection) to make it 2D
void	setOutlineAtBoundary(boolean outlineAtBoundary)

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProviderUnary

get, getMask, setMask

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ExteriorContour

public ExteriorContour()

Method Details

createFromMask

public Mask createFromMask(Mask mask)
                    throws ProvisionFailedException

Description copied from class: MaskProviderUnary

Creates a Mask given the entity provided by the delegate.

Specified by:

createFromMask in class MaskProviderUnary

Parameters:

mask - the entity provided by the delegate.

Returns:

the created Mask that is returned by the provider.

Throws:

ProvisionFailedException - if the provider cannot complete successfully.

isFlatten

public boolean isFlatten()

If true, any 3D mask is flattened in the z-dimension (maximum intensity projection) to make it 2D

setFlatten

public void setFlatten(boolean flatten)

If true, any 3D mask is flattened in the z-dimension (maximum intensity projection) to make it 2D

isOutlineAtBoundary

public boolean isOutlineAtBoundary()

setOutlineAtBoundary

public void setOutlineAtBoundary(boolean outlineAtBoundary)