Package org.anchoranalysis.plugin.image.bean.object.provider.merge

Class MergeBase

Object

AnchorBean<ObjectCollectionProvider>

InitializableBean<ObjectCollectionProvider,ImageInitialization>

ImageBean<ObjectCollectionProvider>

ObjectCollectionProvider

ObjectCollectionProviderUnary

WithContainerBase

MergeBase

All Implemented Interfaces:

Provider<ObjectCollection>

Direct Known Subclasses:

MergeWithOptionalDistanceConstraint

public abstract class MergeBase
extends WithContainerBase

A base class for algorithms that merge object-masks.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
protected static interface	MergeBase.MergeObjects	Functional interface for merging objects.

Constructor Summary

Constructors

Constructor	Description
MergeBase()

Method Summary

Modifier and Type	Method	Description
DimensionsProvider	getDimensions()	Provider for image dimensions.
protected ObjectCollection	mergeMultiplex(ObjectCollection objects, MergeBase.MergeObjects mergeFunc)	Merges objects either in a container or altogether.
protected Resolution	resolutionRequired()	Gets the required Resolution.
void	setDimensions(DimensionsProvider dimensions)	Provider for image dimensions.
protected Optional<UnitConverter>	unitConvertOptional()	Gets an optional UnitConverter based on the image resolution.

Methods inherited from class org.anchoranalysis.plugin.image.bean.object.provider.WithContainerBase

containerOptional, containerRequired, getObjectsContainer, setObjectsContainer

Methods inherited from class org.anchoranalysis.image.bean.provider.ObjectCollectionProviderUnary

createFromObjects, get, getObjects, setObjects

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

MergeBase

public MergeBase()

Method Details

unitConvertOptional

protected Optional<UnitConverter> unitConvertOptional()
                                               throws OperationFailedException

Gets an optional UnitConverter based on the image resolution.

Returns:

an Optional containing a UnitConverter if resolution is available, empty otherwise

Throws:

OperationFailedException - if retrieving the resolution fails

resolutionRequired

protected Resolution resolutionRequired()
                                 throws OperationFailedException

Gets the required Resolution.

Returns:

the Resolution

Throws:

OperationFailedException - if the resolution is not available

mergeMultiplex

protected ObjectCollection mergeMultiplex(ObjectCollection objects,
 MergeBase.MergeObjects mergeFunc)
                                   throws OperationFailedException

Merges objects either in a container or altogether.

Parameters:

objects - the ObjectCollection to merge

mergeFunc - a function that merges a collection of objects together (changes the collection in place)

Returns:

the merged ObjectCollection

Throws:

OperationFailedException - if the merge operation fails

getDimensions

public DimensionsProvider getDimensions()

Provider for image dimensions.

setDimensions

public void setDimensions(DimensionsProvider dimensions)

Provider for image dimensions.