Package org.anchoranalysis.plugin.image.bean.object.provider.segment

Class SegmentChannel

Object

AnchorBean<ObjectCollectionProvider>

InitializableBean<ObjectCollectionProvider,ImageInitialization>

ImageBean<ObjectCollectionProvider>

ObjectCollectionProvider

WithChannelBase

SegmentChannel

All Implemented Interfaces:

Provider<ObjectCollection>

public class SegmentChannel
extends WithChannelBase

Segments a channel into objects using a specified segmentation algorithm.

This class extends WithChannelBase to provide functionality for segmenting a channel into objects, optionally using a mask and seed objects.

Constructor Summary

Constructors

Constructor	Description
SegmentChannel()

Method Summary

Modifier and Type	Method	Description
protected ObjectCollection	createFromChannel(Channel channelSource)	Creates an ObjectCollection from a source Channel.
MaskProvider	getMask()	Optional mask to restrict the segmentation area.
ObjectCollectionProvider	getObjectsSeeds()	Optional provider for seed objects to guide the segmentation.
SegmentChannelIntoObjects	getSegment()	The segmentation algorithm to use.
void	setMask(MaskProvider mask)	Optional mask to restrict the segmentation area.
void	setObjectsSeeds(ObjectCollectionProvider objectsSeeds)	Optional provider for seed objects to guide the segmentation.
void	setSegment(SegmentChannelIntoObjects segment)	The segmentation algorithm to use.

Methods inherited from class org.anchoranalysis.plugin.image.bean.object.provider.WithChannelBase

get, getChannel, setChannel

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

SegmentChannel

public SegmentChannel()

Method Details

createFromChannel

protected ObjectCollection createFromChannel(Channel channelSource)
                                      throws ProvisionFailedException

Description copied from class: WithChannelBase

Creates an ObjectCollection from a source Channel.

Specified by:

createFromChannel in class WithChannelBase

Parameters:

channelSource - the source channel

Returns:

the created object collection

Throws:

ProvisionFailedException - if object creation fails

getMask

public MaskProvider getMask()

Optional mask to restrict the segmentation area.

setMask

public void setMask(MaskProvider mask)

Optional mask to restrict the segmentation area.

getSegment

public SegmentChannelIntoObjects getSegment()

The segmentation algorithm to use.

setSegment

public void setSegment(SegmentChannelIntoObjects segment)

The segmentation algorithm to use.

getObjectsSeeds

public ObjectCollectionProvider getObjectsSeeds()

Optional provider for seed objects to guide the segmentation.

setObjectsSeeds

public void setObjectsSeeds(ObjectCollectionProvider objectsSeeds)

Optional provider for seed objects to guide the segmentation.