Package org.anchoranalysis.plugin.image.bean.object.provider.segment

Class SegmentChannelByObject

Object

AnchorBean<ObjectCollectionProvider>

InitializableBean<ObjectCollectionProvider,ImageInitialization>

ImageBean<ObjectCollectionProvider>

ObjectCollectionProvider

ObjectCollectionProviderUnary

UnaryWithChannelBase

SegmentChannelByObject

All Implemented Interfaces:

Provider<ObjectCollection>

public class SegmentChannelByObject
extends UnaryWithChannelBase

Performs segmentation of a channel using each object in the upstream collection as a mask.

Specifically, a segmentation is performed for each object-mask in the upstream collection, and then the results are combined.

This is useful when a partition (segmentation) of a channel already exists, and a futher segmentation is desired without breaking the boundaries of the initial partition (segmentation).

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
SegmentChannelByObject()

Method Summary

Modifier and Type	Method	Description
ObjectCollection	createFromObjects(ObjectCollection objectsSource, Channel channelToSegment)	Creates objects from a source collection and a channel.
SegmentChannelIntoObjects	getSegment()
void	setSegment(SegmentChannelIntoObjects segment)

Methods inherited from class org.anchoranalysis.plugin.image.bean.object.provider.UnaryWithChannelBase

createFromObjects, getChannel, setChannel

Methods inherited from class org.anchoranalysis.image.bean.provider.ObjectCollectionProviderUnary

get, getObjects, setObjects

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

SegmentChannelByObject

public SegmentChannelByObject()

Method Details

createFromObjects

public ObjectCollection createFromObjects(ObjectCollection objectsSource,
 Channel channelToSegment)
                                   throws ProvisionFailedException

Description copied from class: UnaryWithChannelBase

Creates objects from a source collection and a channel.

Specified by:

createFromObjects in class UnaryWithChannelBase

Parameters:

objectsSource - the source object collection

channelToSegment - the source channel

Returns:

the newly created object collection

Throws:

ProvisionFailedException - if object creation fails

getSegment

public SegmentChannelIntoObjects getSegment()

setSegment

public void setSegment(SegmentChannelIntoObjects segment)