Package org.anchoranalysis.plugin.image.bean.object.segment.channel

Class AtScale

Object

AnchorBean<SegmentChannelIntoObjects>

InitializableBean<SegmentChannelIntoObjects,ImageInitialization>

ImageBean<SegmentChannelIntoObjects>

SegmentationBean<SegmentChannelIntoObjects>

SegmentChannelIntoObjects

SegmentChannelIntoObjectsUnary

AtScale

public class AtScale
extends SegmentChannelIntoObjectsUnary

Perform a segmentation at a different scale, and then fit the results back to the original scale.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
AtScale()

Method Summary

Modifier and Type	Method	Description
Interpolator	getInterpolator()	The interpolator to use.
int	getOutlineWidth()
ScaleCalculator	getScaleCalculator()
ObjectCollection	segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)	Creates an ObjectCollection given the segmentation-results provided by the delegate.
void	setInterpolator(Interpolator interpolator)	The interpolator to use.
void	setOutlineWidth(int outlineWidth)
void	setScaleCalculator(ScaleCalculator scaleCalculator)

Methods inherited from class org.anchoranalysis.image.bean.segment.object.SegmentChannelIntoObjectsUnary

getSegment, segment, setSegment

Methods inherited from class org.anchoranalysis.image.bean.segment.object.SegmentChannelIntoObjects

checkUnsupported3D, checkUnsupportedObjectMask, checkUnsupportedSeeds

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

AtScale

public AtScale()

Method Details

segment

public ObjectCollection segment(Channel channel,
 Optional<ObjectMask> objectMask,
 Optional<ObjectCollection> seeds,
 SegmentChannelIntoObjects upstreamSegmenter)
                         throws SegmentationFailedException

Description copied from class: SegmentChannelIntoObjectsUnary

Creates an ObjectCollection given the segmentation-results provided by the delegate.

Specified by:

segment in class SegmentChannelIntoObjectsUnary

Parameters:

channel - the channel as passed to SegmentChannelIntoObjectsUnary.segment(Channel, Optional, Optional).

objectMask - the object-mask as passed to SegmentChannelIntoObjectsUnary.segment(Channel, Optional, Optional).

seeds - the seeds as passed to SegmentChannelIntoObjectsUnary.segment(Channel, Optional, Optional).

upstreamSegmenter - the delegate segmenter.

Returns:

the created ObjectCollection that is returned by the segmentation.

Throws:

SegmentationFailedException - if segmentation cannot complete successfully.

getScaleCalculator

public ScaleCalculator getScaleCalculator()

setScaleCalculator

public void setScaleCalculator(ScaleCalculator scaleCalculator)

getOutlineWidth

public int getOutlineWidth()

setOutlineWidth

public void setOutlineWidth(int outlineWidth)

getInterpolator

public Interpolator getInterpolator()

The interpolator to use.

setInterpolator

public void setInterpolator(Interpolator interpolator)

The interpolator to use.