Package org.anchoranalysis.plugin.image.bean.object.segment.channel

Class ImposeMinima

Object

AnchorBean<SegmentChannelIntoObjects>

InitializableBean<SegmentChannelIntoObjects,ImageInitialization>

ImageBean<SegmentChannelIntoObjects>

SegmentationBean<SegmentChannelIntoObjects>

SegmentChannelIntoObjects

SegmentChannelIntoObjectsUnary

ImposeMinima

public class ImposeMinima
extends SegmentChannelIntoObjectsUnary

Imposes minima in seed locations on the input-channel before performing the segmentation

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
ImposeMinima()

Method Summary

Modifier and Type	Method	Description
MinimaImposition	getMinimaImposition()
ObjectCollection	segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)	Creates an ObjectCollection given the segmentation-results provided by the delegate.
void	setMinimaImposition(MinimaImposition minimaImposition)

Methods inherited from class org.anchoranalysis.image.bean.segment.object.SegmentChannelIntoObjectsUnary

getSegment, segment, setSegment

Methods inherited from class org.anchoranalysis.image.bean.segment.object.SegmentChannelIntoObjects

checkUnsupported3D, checkUnsupportedObjectMask, checkUnsupportedSeeds

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ImposeMinima

public ImposeMinima()

Method Details

segment

public ObjectCollection segment(Channel channel,
 Optional<ObjectMask> objectMask,
 Optional<ObjectCollection> seeds,
 SegmentChannelIntoObjects upstreamSegmenter)
                         throws SegmentationFailedException

Description copied from class: SegmentChannelIntoObjectsUnary

Creates an ObjectCollection given the segmentation-results provided by the delegate.

Specified by:

segment in class SegmentChannelIntoObjectsUnary

Parameters:

channel - the channel as passed to SegmentChannelIntoObjectsUnary.segment(Channel, Optional, Optional).

objectMask - the object-mask as passed to SegmentChannelIntoObjectsUnary.segment(Channel, Optional, Optional).

seeds - the seeds as passed to SegmentChannelIntoObjectsUnary.segment(Channel, Optional, Optional).

upstreamSegmenter - the delegate segmenter.

Returns:

the created ObjectCollection that is returned by the segmentation.

Throws:

SegmentationFailedException - if segmentation cannot complete successfully.

getMinimaImposition

public MinimaImposition getMinimaImposition()

setMinimaImposition

public void setMinimaImposition(MinimaImposition minimaImposition)