Package org.anchoranalysis.plugin.image.bean.object.segment.channel

Class Mser

Object

AnchorBean<SegmentChannelIntoObjects>

InitializableBean<SegmentChannelIntoObjects,ImageInitialization>

ImageBean<SegmentChannelIntoObjects>

SegmentationBean<SegmentChannelIntoObjects>

SegmentChannelIntoObjects

Mser

public class Mser
extends SegmentChannelIntoObjects

Applies the MSER algorithm from imglib2

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
Mser()

Method Summary

Modifier and Type	Method	Description
double	getDelta()
long	getMaxSize()
double	getMaxVar()
double	getMinDiversity()
long	getMinSize()
ObjectCollection	segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds)	Segments a channel to produce an object-collection.
void	setDelta(double delta)
void	setMaxSize(long maxSize)
void	setMaxVar(double maxVar)
void	setMinDiversity(double minDiversity)
void	setMinSize(long minSize)

Methods inherited from class org.anchoranalysis.image.bean.segment.object.SegmentChannelIntoObjects

checkUnsupported3D, checkUnsupportedObjectMask, checkUnsupportedSeeds

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Mser

public Mser()

Method Details

segment

public ObjectCollection segment(Channel channel,
 Optional<ObjectMask> objectMask,
 Optional<ObjectCollection> seeds)
                         throws SegmentationFailedException

Description copied from class: SegmentChannelIntoObjects

Segments a channel to produce an object-collection.

Specified by:

segment in class SegmentChannelIntoObjects

Parameters:

channel - the channel to segment

objectMask - an object-mask that can restrict which areas of the channel are considered.

seeds - seeds that can be used to determine starting-points for segmentation regions.

Returns:

a newly created collection of objects for each segment. The created objects will always exist inside the channel's extent.

Throws:

SegmentationFailedException - if anything goes wrong during the segmentation.

getMinSize

public long getMinSize()

setMinSize

public void setMinSize(long minSize)

getMaxSize

public long getMaxSize()

setMaxSize

public void setMaxSize(long maxSize)

getMaxVar

public double getMaxVar()

setMaxVar

public void setMaxVar(double maxVar)

getMinDiversity

public double getMinDiversity()

setMinDiversity

public void setMinDiversity(double minDiversity)

getDelta

public double getDelta()

setDelta

public void setDelta(double delta)