Package org.anchoranalysis.plugin.image.bean.segment.binary

Class Invert

Object

AnchorBean<BinarySegmentation>

InitializableBean<BinarySegmentation,ImageInitialization>

ImageBean<BinarySegmentation>

SegmentationBean<BinarySegmentation>

BinarySegmentation

BinarySegmentationUnary

Invert

public class Invert
extends BinarySegmentationUnary

Performs a segmentation and inverts and on and off bytes

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
Invert()

Method Summary

Modifier and Type	Method	Description
BinaryVoxels<UnsignedByteBuffer>	segmentFromExistingSegmentation(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask, BinarySegmentation segment)	Performs a binary-segmentation, in a similar manner to BinarySegmentation.segment(org.anchoranalysis.image.voxel.VoxelsUntyped, org.anchoranalysis.image.bean.nonbean.segment.BinarySegmentationParameters, java.util.Optional<org.anchoranalysis.image.voxel.object.ObjectMask>) but with the delegate as additional argument.

Methods inherited from class org.anchoranalysis.image.bean.segment.binary.BinarySegmentationUnary

getSegment, segment, setSegment

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Invert

public Invert()

Method Details

segmentFromExistingSegmentation

public BinaryVoxels<UnsignedByteBuffer> segmentFromExistingSegmentation(VoxelsUntyped voxels,
 BinarySegmentationParameters parameters,
 Optional<ObjectMask> objectMask,
 BinarySegmentation segment)
                                                                 throws SegmentationFailedException

Description copied from class: BinarySegmentationUnary

Performs a binary-segmentation, in a similar manner to BinarySegmentation.segment(org.anchoranalysis.image.voxel.VoxelsUntyped, org.anchoranalysis.image.bean.nonbean.segment.BinarySegmentationParameters, java.util.Optional<org.anchoranalysis.image.voxel.object.ObjectMask>) but with the delegate as additional argument.

Specified by:

segmentFromExistingSegmentation in class BinarySegmentationUnary

Parameters:

voxels - voxels to segment.

parameters - parameters to guide the algorithm.

objectMask - if present, segmentation only occurs inside this object.

segment - the delegate BinarySegmentation.

Returns:

voxels for a mask on the input-buffer, which may be newly-created, or may reuse the input voxels, depending on implementation.

Throws:

SegmentationFailedException - if the segmentation cannot be successfully completed.