Package org.anchoranalysis.plugin.image.bean.segment.binary

Class Repeat

Object

AnchorBean<BinarySegmentation>

InitializableBean<BinarySegmentation,ImageInitialization>

ImageBean<BinarySegmentation>

SegmentationBean<BinarySegmentation>

BinarySegmentation

BinarySegmentationUnary

Repeat

public class Repeat
extends BinarySegmentationUnary

Repeats a binary segmentation operation for a specified number of iterations.

Constructor Summary

Constructors

Constructor	Description
Repeat()

Method Summary

Modifier and Type	Method	Description
int	getIterations()	The maximum number of iterations.
BinaryVoxels<UnsignedByteBuffer>	segmentFromExistingSegmentation(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask, BinarySegmentation segment)	Performs a binary-segmentation, in a similar manner to BinarySegmentation.segment(org.anchoranalysis.image.voxel.VoxelsUntyped, org.anchoranalysis.image.bean.nonbean.segment.BinarySegmentationParameters, java.util.Optional<org.anchoranalysis.image.voxel.object.ObjectMask>) but with the delegate as additional argument.
void	setIterations(int iterations)	The maximum number of iterations.

Methods inherited from class org.anchoranalysis.image.bean.segment.binary.BinarySegmentationUnary

getSegment, segment, setSegment

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Repeat

public Repeat()

Method Details

segmentFromExistingSegmentation

public BinaryVoxels<UnsignedByteBuffer> segmentFromExistingSegmentation(VoxelsUntyped voxels,
 BinarySegmentationParameters parameters,
 Optional<ObjectMask> objectMask,
 BinarySegmentation segment)
                                                                 throws SegmentationFailedException

Description copied from class: BinarySegmentationUnary

Performs a binary-segmentation, in a similar manner to BinarySegmentation.segment(org.anchoranalysis.image.voxel.VoxelsUntyped, org.anchoranalysis.image.bean.nonbean.segment.BinarySegmentationParameters, java.util.Optional<org.anchoranalysis.image.voxel.object.ObjectMask>) but with the delegate as additional argument.

Specified by:

segmentFromExistingSegmentation in class BinarySegmentationUnary

Parameters:

voxels - voxels to segment.

parameters - parameters to guide the algorithm.

objectMask - if present, segmentation only occurs inside this object.

segment - the delegate BinarySegmentation.

Returns:

voxels for a mask on the input-buffer, which may be newly-created, or may reuse the input voxels, depending on implementation.

Throws:

SegmentationFailedException - if the segmentation cannot be successfully completed.

getIterations

public int getIterations()

The maximum number of iterations.

If the mask no longer has on voxels after fewer iterations, it will terminate earlier.

setIterations

public void setIterations(int iterations)

The maximum number of iterations.

If the mask no longer has on voxels after fewer iterations, it will terminate earlier.