Package org.anchoranalysis.plugin.image.bean.segment.binary

Class Sequence

Object

AnchorBean<BinarySegmentation>

InitializableBean<BinarySegmentation,ImageInitialization>

ImageBean<BinarySegmentation>

SegmentationBean<BinarySegmentation>

BinarySegmentation

Sequence

public class Sequence
extends BinarySegmentation

Performs a sequence of succesive segmentations

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
Sequence()

Method Summary

Modifier and Type	Method	Description
void	checkMisconfigured(BeanInstanceMap defaultInstances)	Checks that a bean's properties conform to expectations.
List<BinarySegmentation>	getList()	A list of binary-segmentations that are applied successively (the output of the predecessor becomes the input of the sucecssor)
BinaryVoxels<UnsignedByteBuffer>	segment(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask)	Performs a segmentation on voxels so that each voxel has an on or off state after the operation.
void	setList(List<BinarySegmentation> list)	A list of binary-segmentations that are applied successively (the output of the predecessor becomes the input of the sucecssor)

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Sequence

public Sequence()

Method Details

checkMisconfigured

public void checkMisconfigured(BeanInstanceMap defaultInstances)
                        throws BeanMisconfiguredException

Description copied from class: AnchorBean

Checks that a bean's properties conform to expectations.

Overrides:

checkMisconfigured in class AnchorBean<BinarySegmentation>

Parameters:

defaultInstances - all available default instances if the DefaultInstance annotation is used

Throws:

BeanMisconfiguredException - if the bean has not been configured properly as XML

segment

public BinaryVoxels<UnsignedByteBuffer> segment(VoxelsUntyped voxels,
 BinarySegmentationParameters parameters,
 Optional<ObjectMask> objectMask)
                                         throws SegmentationFailedException

Description copied from class: BinarySegmentation

Performs a segmentation on voxels so that each voxel has an on or off state after the operation.

Specified by:

segment in class BinarySegmentation

Parameters:

voxels - voxels to segment.

parameters - parameters to guide the algorithm.

objectMask - if present, segmentation only occurs inside this object.

Returns:

voxels for a mask on the input-buffer, which may be newly-created, or may reuse the input voxels, depending on implementation.

Throws:

SegmentationFailedException - if the segmentation cannot be successfully completed.

getList

public List<BinarySegmentation> getList()

A list of binary-segmentations that are applied successively (the output of the predecessor becomes the input of the sucecssor)

setList

public void setList(List<BinarySegmentation> list)

A list of binary-segmentations that are applied successively (the output of the predecessor becomes the input of the sucecssor)