Package org.anchoranalysis.plugin.image.bean.segment.binary

Class ThresholdAgainstChannel

Object

AnchorBean<BinarySegmentation>

InitializableBean<BinarySegmentation,ImageInitialization>

ImageBean<BinarySegmentation>

SegmentationBean<BinarySegmentation>

BinarySegmentation

ThresholdAgainstChannel

public class ThresholdAgainstChannel
extends BinarySegmentation

Thresholds each voxels by comparing against another channel that has per-voxel thresholds

It sets an output voxel as high, if it is greater than or equal to the pixel in the threshold channel

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
ThresholdAgainstChannel()

Method Summary

Modifier and Type	Method	Description
ChannelProvider	getChannelThreshold()
boolean	isClearOutsideMask()
BinaryVoxels<UnsignedByteBuffer>	segment(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> object)	Performs a segmentation on voxels so that each voxel has an on or off state after the operation.
void	setChannelThreshold(ChannelProvider channelThreshold)
void	setClearOutsideMask(boolean clearOutsideMask)

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

ThresholdAgainstChannel

public ThresholdAgainstChannel()

Method Details

segment

public BinaryVoxels<UnsignedByteBuffer> segment(VoxelsUntyped voxels,
 BinarySegmentationParameters parameters,
 Optional<ObjectMask> object)
                                         throws SegmentationFailedException

Description copied from class: BinarySegmentation

Performs a segmentation on voxels so that each voxel has an on or off state after the operation.

Specified by:

segment in class BinarySegmentation

Parameters:

voxels - voxels to segment.

parameters - parameters to guide the algorithm.

object - if present, segmentation only occurs inside this object.

Returns:

voxels for a mask on the input-buffer, which may be newly-created, or may reuse the input voxels, depending on implementation.

Throws:

SegmentationFailedException - if the segmentation cannot be successfully completed.

getChannelThreshold

public ChannelProvider getChannelThreshold()

setChannelThreshold

public void setChannelThreshold(ChannelProvider channelThreshold)

isClearOutsideMask

public boolean isClearOutsideMask()

setClearOutsideMask

public void setClearOutsideMask(boolean clearOutsideMask)