Package org.anchoranalysis.plugin.image.feature.bean.object.single.energy

Class NumberNeighboringVoxels

Object

AnchorBean<Feature<FeatureInputSingleObject>>

InitializableBean<Feature<FeatureInputSingleObject>,FeatureInitialization>

Feature<FeatureInputSingleObject>

FeatureSingleObject

OutlineKernelBase

NumberNeighboringVoxels

public class NumberNeighboringVoxels
extends OutlineKernelBase

Calculates the number of voxels on the object that have a neighbor.

What possible neighbors are specified by a binary-mask from an energy-channel. This should have with 255 high, and 0 low, and indicate all possible neighbor voxels. The region on the binary-mask coinciding with the object is irrelevant and be set to any value.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
NumberNeighboringVoxels()

Method Summary

Modifier and Type	Method	Description
protected double	calculateWithParameters(ObjectMask object, KernelApplicationParameters parameters, CheckedSupplier<EnergyStack,FeatureCalculationException> energyStack)	Calculates the feature value using the specified parameters.
int	getEnergyIndex()	Index of which channel in the energy-stack to select
void	setEnergyIndex(int energyIndex)	Index of which channel in the energy-stack to select

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.object.single.OutlineKernelBase

calculate, isDo3D, isIgnoreAtThreshold, isOutsideAtThreshold, setDo3D, setIgnoreAtThreshold, setOutsideAtThreshold

Methods inherited from class org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

inputType

Methods inherited from class org.anchoranalysis.feature.bean.Feature

assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

NumberNeighboringVoxels

public NumberNeighboringVoxels()

Method Details

calculateWithParameters

protected double calculateWithParameters(ObjectMask object,
 KernelApplicationParameters parameters,
 CheckedSupplier<EnergyStack,FeatureCalculationException> energyStack)
                                  throws FeatureCalculationException

Description copied from class: OutlineKernelBase

Calculates the feature value using the specified parameters.

Specified by:

calculateWithParameters in class OutlineKernelBase

Parameters:

object - the ObjectMask to calculate the feature on

parameters - the KernelApplicationParameters for applying the kernel

energyStack - a supplier for the EnergyStack

Returns:

the calculated feature value

Throws:

FeatureCalculationException - if the calculation fails

getEnergyIndex

public int getEnergyIndex()

Index of which channel in the energy-stack to select

setEnergyIndex

public void setEnergyIndex(int energyIndex)

Index of which channel in the energy-stack to select