Package org.anchoranalysis.plugin.image.feature.bean.object.single.intensity

Class IntensityMeanMaxSlice

Object

AnchorBean<Feature<FeatureInputSingleObject>>

InitializableBean<Feature<FeatureInputSingleObject>,FeatureInitialization>

Feature<FeatureInputSingleObject>

FeatureSingleObject

FeatureEnergyChannel

IntensityMeanMaxSlice

public class IntensityMeanMaxSlice
extends FeatureEnergyChannel

Calculates the maximum mean intensity across all slices of an object in a channel.

Constructor Summary

Constructors

Constructor	Description
IntensityMeanMaxSlice()

Method Summary

Modifier and Type	Method	Description
protected double	calculateForChannel(FeatureCalculationInput<FeatureInputSingleObject> input, Channel channel)	Calculates the maximum mean intensity across all slices of the object in the given channel.
int	getEmptyValue()	The value to return when the object has no voxels in any slice.
boolean	isExcludeZero()	If true, zero-valued voxels are excluded from the mean intensity calculation.
void	setEmptyValue(int emptyValue)	The value to return when the object has no voxels in any slice.
void	setExcludeZero(boolean excludeZero)	If true, zero-valued voxels are excluded from the mean intensity calculation.

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.FeatureEnergyChannel

calculate, getEnergyIndex, setEnergyIndex

Methods inherited from class org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

inputType

Methods inherited from class org.anchoranalysis.feature.bean.Feature

assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

IntensityMeanMaxSlice

public IntensityMeanMaxSlice()

Method Details

calculateForChannel

protected double calculateForChannel(FeatureCalculationInput<FeatureInputSingleObject> input,
 Channel channel)
                              throws FeatureCalculationException

Calculates the maximum mean intensity across all slices of the object in the given channel.

Specified by:

calculateForChannel in class FeatureEnergyChannel

Parameters:

input - the FeatureCalculationInput containing the FeatureInputSingleObject

channel - the Channel to calculate the intensity from

Returns:

the maximum mean intensity across all slices, or emptyValue if the object has no voxels

Throws:

FeatureCalculationException - if the calculation fails

isExcludeZero

public boolean isExcludeZero()

If true, zero-valued voxels are excluded from the mean intensity calculation.

setExcludeZero

public void setExcludeZero(boolean excludeZero)

If true, zero-valued voxels are excluded from the mean intensity calculation.

getEmptyValue

public int getEmptyValue()

The value to return when the object has no voxels in any slice.

setEmptyValue

public void setEmptyValue(int emptyValue)

The value to return when the object has no voxels in any slice.