Package org.anchoranalysis.plugin.image.feature.bean.score

Class CalculateLevel

Object

AnchorBean<VoxelScore>

InitializableBean<VoxelScore,ImageInitialization>

ImageBean<VoxelScore>

VoxelScore

SingleChannel

CalculateLevelBase

CalculateLevel

public class CalculateLevel
extends CalculateLevelBase

Calculates a level score based on voxel intensity and a given threshold.

Constructor Summary

Constructors

Constructor	Description
CalculateLevel()

Method Summary

Modifier and Type	Method	Description
protected void	beforeCalcSetup(Histogram histogram, int level)	Performs setup operations before calculation.
protected double	calculateForVoxel(int voxelIntensity, int level)	Calculates a score for a single voxel based on its intensity and the threshold level.
double	getDistanceMax()	The maximum distance from the threshold level to consider.
void	setDistanceMax(double distanceMax)	The maximum distance from the threshold level to consider.

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.score.CalculateLevelBase

deriveScoreFromVoxel, getCalculateLevel, getHistogramChannelIndex, initialize, setCalculateLevel, setHistogramChannelIndex

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.score.SingleChannel

calculate, getEnergyChannelIndex, setEnergyChannelIndex

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

CalculateLevel

public CalculateLevel()

Method Details

beforeCalcSetup

protected void beforeCalcSetup(Histogram histogram,
 int level)

Description copied from class: CalculateLevelBase

Performs setup operations before calculation.

Specified by:

beforeCalcSetup in class CalculateLevelBase

Parameters:

histogram - the Histogram to use for setup

level - the calculated threshold level

calculateForVoxel

protected double calculateForVoxel(int voxelIntensity,
 int level)

Description copied from class: CalculateLevelBase

Calculates a score for a single voxel based on its intensity and the threshold level.

Specified by:

calculateForVoxel in class CalculateLevelBase

Parameters:

voxelIntensity - the intensity of the voxel

level - the threshold level

Returns:

a score for the voxel

getDistanceMax

public double getDistanceMax()

The maximum distance from the threshold level to consider.

setDistanceMax

public void setDistanceMax(double distanceMax)

The maximum distance from the threshold level to consider.