Package org.anchoranalysis.plugin.image.feature.bean.score

Class FromDictionaryBase

Object

AnchorBean<VoxelScore>

InitializableBean<VoxelScore,ImageInitialization>

ImageBean<VoxelScore>

VoxelScore

SingleChannel

FromDictionaryBase

public abstract class FromDictionaryBase
extends SingleChannel

An abstract base class for features that require a Dictionary for initialization.

Constructor Summary

Constructors

Constructor	Description
FromDictionaryBase()

Method Summary

Modifier and Type	Method	Description
protected static double	extractAsDouble(Dictionary dictionary, String key)	Extracts a double value from the dictionary for a given key.
void	initialize(List<Histogram> histograms, Optional<Dictionary> dictionary)	Initializes the feature with histograms and a dictionary.
protected abstract void	setupDictionary(Dictionary dictionary)	Sets up the feature using the provided dictionary.

Methods inherited from class org.anchoranalysis.plugin.image.feature.bean.score.SingleChannel

calculate, deriveScoreFromVoxel, getEnergyChannelIndex, setEnergyChannelIndex

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

FromDictionaryBase

public FromDictionaryBase()

Method Details

initialize

public void initialize(List<Histogram> histograms,
 Optional<Dictionary> dictionary)
                throws InitializeException

Initializes the feature with histograms and a dictionary.

Overrides:

initialize in class VoxelScore

Parameters:

histograms - a list of Histograms

dictionary - an optional Dictionary

Throws:

InitializeException - if the dictionary is not present or initialization fails

setupDictionary

protected abstract void setupDictionary(Dictionary dictionary)
                                 throws InitializeException

Sets up the feature using the provided dictionary.

Parameters:

dictionary - the Dictionary to use for setup

Throws:

InitializeException - if setup fails

extractAsDouble

protected static double extractAsDouble(Dictionary dictionary,
 String key)
                                 throws InitializeException

Extracts a double value from the dictionary for a given key.

Parameters:

dictionary - the Dictionary to extract from

key - the key to look up in the dictionary

Returns:

the double value associated with the key

Throws:

InitializeException - if the key does not exist in the dictionary