Package org.anchoranalysis.plugin.image.feature.bean.score

Class Identity

Object

AnchorBean<VoxelScore>

InitializableBean<VoxelScore,ImageInitialization>

ImageBean<VoxelScore>

VoxelScore

Identity

public class Identity
extends VoxelScore

A voxel score that can optionally normalize and adjust the intensity values.

Constructor Summary

Constructors

Constructor	Description
Identity()

Method Summary

Modifier and Type	Method	Description
double	calculate(int[] voxelIntensities)	Calculates a score for a set of voxel intensities.
int	getEnergyChannelIndex()	The index of the energy channel to use for calculations.
double	getFactorHigh()	The factor to apply for values above 0.5 when normalizing.
double	getFactorLow()	The factor to apply for values below 0.5 when normalizing.
boolean	isKeepExtremes()	Whether to keep extreme values (0 and 1) unchanged when normalizing.
boolean	isNormalize()	Whether to normalize the voxel intensity values.
void	setEnergyChannelIndex(int energyChannelIndex)	The index of the energy channel to use for calculations.
void	setFactorHigh(double factorHigh)	The factor to apply for values above 0.5 when normalizing.
void	setFactorLow(double factorLow)	The factor to apply for values below 0.5 when normalizing.
void	setKeepExtremes(boolean keepExtremes)	Whether to keep extreme values (0 and 1) unchanged when normalizing.
void	setNormalize(boolean normalize)	Whether to normalize the voxel intensity values.

Methods inherited from class org.anchoranalysis.image.feature.bean.VoxelScore

initialize

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Identity

public Identity()

Method Details

calculate

public double calculate(int[] voxelIntensities)
                 throws FeatureCalculationException

Description copied from class: VoxelScore

Calculates a score for a set of voxel intensities.

Specified by:

calculate in class VoxelScore

Parameters:

voxelIntensities - an array of voxel intensity values

Returns:

the calculated score for the given voxel intensities

Throws:

FeatureCalculationException - if the calculation fails

getEnergyChannelIndex

public int getEnergyChannelIndex()

The index of the energy channel to use for calculations.

setEnergyChannelIndex

public void setEnergyChannelIndex(int energyChannelIndex)

The index of the energy channel to use for calculations.

isNormalize

public boolean isNormalize()

Whether to normalize the voxel intensity values.

setNormalize

public void setNormalize(boolean normalize)

Whether to normalize the voxel intensity values.

getFactorLow

public double getFactorLow()

The factor to apply for values below 0.5 when normalizing.

setFactorLow

public void setFactorLow(double factorLow)

The factor to apply for values below 0.5 when normalizing.

getFactorHigh

public double getFactorHigh()

The factor to apply for values above 0.5 when normalizing.

setFactorHigh

public void setFactorHigh(double factorHigh)

The factor to apply for values above 0.5 when normalizing.

isKeepExtremes

public boolean isKeepExtremes()

Whether to keep extreme values (0 and 1) unchanged when normalizing.

setKeepExtremes

public void setKeepExtremes(boolean keepExtremes)

Whether to keep extreme values (0 and 1) unchanged when normalizing.