Package org.anchoranalysis.plugin.image.feature.bean.score

Class IdentityImposeValueRelationToHistogram

Object
AnchorBean<VoxelScore>
InitializableBean<VoxelScore,ImageInitialization>
ImageBean<VoxelScore>
VoxelScore
IdentityImposeValueRelationToHistogram
public class IdentityImposeValueRelationToHistogram extends VoxelScore
A voxel score that imposes a value relation to a histogram.

  • Constructor Details

    • IdentityImposeValueRelationToHistogram

      public IdentityImposeValueRelationToHistogram()

  • Method Details

    • calculate

      public double calculate(int[] voxelIntensities) throws FeatureCalculationException
      Description copied from class: VoxelScore
      Calculates a score for a set of voxel intensities.
      Specified by:
      calculate in class VoxelScore
      Parameters:
      voxelIntensities - an array of voxel intensity values
      Returns:
      the calculated score for the given voxel intensities
      Throws:
      FeatureCalculationException - if the calculation fails

    • initialize

      public void initialize(List<Histogram> histograms, Optional<Dictionary> dictionary) throws InitializeException
      Description copied from class: VoxelScore
      Initializes the voxels-score.

      Must be called before VoxelScore.calculate(int[]).

      Overrides:
      initialize in class VoxelScore
      Parameters:
      histograms - one or more histograms associated with this calculation
      dictionary - optional Dictionary associated with this calculation
      Throws:
      InitializeException - if anything goes wrong

    • getEnergyChannelIndexCheck

      public int getEnergyChannelIndexCheck()
      The index of the energy channel to check.

    • setEnergyChannelIndexCheck

      public void setEnergyChannelIndexCheck(int energyChannelIndexCheck)
      The index of the energy channel to check.

    • getEnergyChannelIndexFail

      public int getEnergyChannelIndexFail()
      The index of the energy channel to use if the relation check fails.

    • setEnergyChannelIndexFail

      public void setEnergyChannelIndexFail(int energyChannelIndexFail)
      The index of the energy channel to use if the relation check fails.

    • getHistogramIndex

      public int getHistogramIndex()
      The index of the histogram to use for comparison.

    • setHistogramIndex

      public void setHistogramIndex(int histogramIndex)
      The index of the histogram to use for comparison.

    • getRelation

      public RelationBean getRelation()
      The relation to test between the voxel value and the histogram value.

    • setRelation

      public void setRelation(RelationBean relation)
      The relation to test between the voxel value and the histogram value.

    • getValue

      public double getValue()
      The value to return if the relation test passes.

    • setValue

      public void setValue(double value)
      The value to return if the relation test passes.

    • isMax

      public boolean isMax()
      Whether to use the maximum (true) or minimum (false) value from the histogram.

    • setMax

      public void setMax(boolean max)
      Whether to use the maximum (true) or minimum (false) value from the histogram.