Package org.anchoranalysis.plugin.image.feature.bean.score

Class RejectIfIntensityLessThan

Object

AnchorBean<VoxelScore>

InitializableBean<VoxelScore,ImageInitialization>

ImageBean<VoxelScore>

VoxelScore

RejectIfIntensityLessThan

public class RejectIfIntensityLessThan
extends VoxelScore

Rejects voxels with intensity less than a specified minimum, otherwise calculates a score using another VoxelScore.

This class extends VoxelScore to provide a specific scoring mechanism for voxels.

Constructor Summary

Constructors

Constructor	Description
RejectIfIntensityLessThan()

Method Summary

Modifier and Type	Method	Description
double	calculate(int[] voxelIntensities)	Calculates a score for a set of voxel intensities.
int	getEnergyChannelIndex()	The index of the energy channel to check for intensity.
VoxelScore	getItem()	The VoxelScore to use for calculating the score if the intensity is not rejected.
int	getMinIntensity()	The minimum intensity threshold.
void	setEnergyChannelIndex(int energyChannelIndex)	The index of the energy channel to check for intensity.
void	setItem(VoxelScore item)	The VoxelScore to use for calculating the score if the intensity is not rejected.
void	setMinIntensity(int minIntensity)	The minimum intensity threshold.

Methods inherited from class org.anchoranalysis.image.feature.bean.VoxelScore

initialize

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

RejectIfIntensityLessThan

public RejectIfIntensityLessThan()

Method Details

calculate

public double calculate(int[] voxelIntensities)
                 throws FeatureCalculationException

Description copied from class: VoxelScore

Calculates a score for a set of voxel intensities.

Specified by:

calculate in class VoxelScore

Parameters:

voxelIntensities - an array of voxel intensity values

Returns:

the calculated score for the given voxel intensities

Throws:

FeatureCalculationException - if the calculation fails

getItem

public VoxelScore getItem()

The VoxelScore to use for calculating the score if the intensity is not rejected.

setItem

public void setItem(VoxelScore item)

The VoxelScore to use for calculating the score if the intensity is not rejected.

getEnergyChannelIndex

public int getEnergyChannelIndex()

The index of the energy channel to check for intensity.

setEnergyChannelIndex

public void setEnergyChannelIndex(int energyChannelIndex)

The index of the energy channel to check for intensity.

getMinIntensity

public int getMinIntensity()

The minimum intensity threshold. Voxels with intensity less than this are rejected (scored as 0).

setMinIntensity

public void setMinIntensity(int minIntensity)

The minimum intensity threshold. Voxels with intensity less than this are rejected (scored as 0).