Package org.anchoranalysis.plugin.image.feature.bean.stack.intensity

Class Intensity

Object

AnchorBean<Feature<FeatureInputStack>>

InitializableBean<Feature<FeatureInputStack>,FeatureInitialization>

Feature<FeatureInputStack>

FeatureStack

Intensity

public class Intensity
extends FeatureStack

The intensity of a particular channel of the stack, by default the mean-intensity.

Alternative statistics to the mean can be calculated via the item bean-field.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
Intensity()

Method Summary

Modifier and Type	Method	Description
protected double	calculate(FeatureCalculationInput<FeatureInputStack> input)	Calculates a value for some input.
String	descriptionLong()	A long human-readable description of the feature and some or all of its parameterization.
int	getEnergyIndex()	The channel that that forms the histogram.
int	getEnergyIndexMask()	Optionally, index of another channel that masks the histogram. -1 disables.
Feature<FeatureInputHistogram>	getItem()	Feature to apply to the histogram.
void	setEnergyIndex(int energyIndex)	The channel that that forms the histogram.
void	setEnergyIndexMask(int energyIndexMask)	Optionally, index of another channel that masks the histogram. -1 disables.
void	setItem(Feature<FeatureInputHistogram> item)	Feature to apply to the histogram.

Methods inherited from class org.anchoranalysis.image.feature.bean.FeatureStack

inputType

Methods inherited from class org.anchoranalysis.feature.bean.Feature

assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Intensity

public Intensity()

Method Details

calculate

protected double calculate(FeatureCalculationInput<FeatureInputStack> input)
                    throws FeatureCalculationException

Description copied from class: Feature

Calculates a value for some input.

Specified by:

calculate in class Feature<FeatureInputStack>

Parameters:

input - the input to the calculation.

Returns:

the result of the calculation.

Throws:

FeatureCalculationException - if the calculation cannot successfully complete.

descriptionLong

public String descriptionLong()

Description copied from class: Feature

A long human-readable description of the feature and some or all of its parameterization.

This can be overwritten to create an alternative description for features. By default string returned by Feature.describeBean() is used.

Overrides:

descriptionLong in class Feature<FeatureInputStack>

Returns:

the description.

getItem

public Feature<FeatureInputHistogram> getItem()

Feature to apply to the histogram.

setItem

public void setItem(Feature<FeatureInputHistogram> item)

Feature to apply to the histogram.

getEnergyIndex

public int getEnergyIndex()

The channel that that forms the histogram.

setEnergyIndex

public void setEnergyIndex(int energyIndex)

The channel that that forms the histogram.

getEnergyIndexMask

public int getEnergyIndexMask()

Optionally, index of another channel that masks the histogram. -1 disables.

setEnergyIndexMask

public void setEnergyIndexMask(int energyIndexMask)

Optionally, index of another channel that masks the histogram. -1 disables.