Package org.anchoranalysis.plugin.image.feature.bean.stack.object

Class AsObjectMask

Object

AnchorBean<Feature<FeatureInputStack>>

InitializableBean<Feature<FeatureInputStack>,FeatureInitialization>

Feature<FeatureInputStack>

FeatureStack

AsObjectMask

public class AsObjectMask
extends FeatureStack

Treats a channel as an object-mask, assuming binary values of 0 and 255 and calls an object-mask feature

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
AsObjectMask()

Method Summary

Modifier and Type	Method	Description
double	calculate(FeatureCalculationInput<FeatureInputStack> input)	Calculates a value for some input.
int	getEnergyIndex()	The channel that that forms an object-mask with the bounding-box set to entire channel's dimensions
Feature<FeatureInputSingleObject>	getItem()
void	setEnergyIndex(int energyIndex)	The channel that that forms an object-mask with the bounding-box set to entire channel's dimensions
void	setItem(Feature<FeatureInputSingleObject> item)

Methods inherited from class org.anchoranalysis.image.feature.bean.FeatureStack

inputType

Methods inherited from class org.anchoranalysis.feature.bean.Feature

assignTo, beforeCalc, calculateCheckInitialized, castAs, createListChildFeatures, describeBean, describeParameters, descriptionLong, duplicateChangeName, getCustomName, getFriendlyName, onInitialization, setCustomName, toString

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

AsObjectMask

public AsObjectMask()

Method Details

calculate

public double calculate(FeatureCalculationInput<FeatureInputStack> input)
                 throws FeatureCalculationException

Description copied from class: Feature

Calculates a value for some input.

Specified by:

calculate in class Feature<FeatureInputStack>

Parameters:

input - the input to the calculation.

Returns:

the result of the calculation.

Throws:

FeatureCalculationException - if the calculation cannot successfully complete.

getItem

public Feature<FeatureInputSingleObject> getItem()

setItem

public void setItem(Feature<FeatureInputSingleObject> item)

getEnergyIndex

public int getEnergyIndex()

The channel that that forms an object-mask with the bounding-box set to entire channel's dimensions

setEnergyIndex

public void setEnergyIndex(int energyIndex)

The channel that that forms an object-mask with the bounding-box set to entire channel's dimensions