Package org.anchoranalysis.plugin.imagej.bean.channel.provider

Class BackgroundSubtractor

Object

AnchorBean<ChannelProvider>

InitializableBean<ChannelProvider,ImageInitialization>

ImageBean<ChannelProvider>

BeanProviderAsStackBase<ChannelProvider,Channel>

ChannelProvider

ChannelProviderUnary

WithRadiusBase

BackgroundSubtractor

All Implemented Interfaces:

Provider<Channel>, ProviderAsStack

public class BackgroundSubtractor
extends WithRadiusBase

Subtracts background from a channel using ImageJ's BackgroundSubtracter.

Constructor Summary

Constructors

Constructor	Description
BackgroundSubtractor()

Method Summary

Modifier and Type	Method	Description
protected Channel	createFromChannel(Channel channel, int radius)	Creates a new channel from an existing channel and a radius.

Methods inherited from class org.anchoranalysis.plugin.imagej.bean.channel.provider.WithRadiusBase

createFromChannel, getRadius, isRadiusInMeters, setRadius, setRadiusInMeters

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProviderUnary

get, getChannel, setChannel

Methods inherited from class org.anchoranalysis.image.bean.provider.ChannelProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

BackgroundSubtractor

public BackgroundSubtractor()

Method Details

createFromChannel

protected Channel createFromChannel(Channel channel,
 int radius)
                             throws ProvisionFailedException

Description copied from class: WithRadiusBase

Creates a new channel from an existing channel and a radius.

Specified by:

createFromChannel in class WithRadiusBase

Parameters:

channel - the input Channel

radius - the radius in voxels

Returns:

the newly created Channel

Throws:

ProvisionFailedException - if the channel creation fails