Package org.anchoranalysis.plugin.imagej.bean.mask.provider

Class FillHoles

Object

AnchorBean<MaskProvider>

InitializableBean<MaskProvider,ImageInitialization>

ImageBean<MaskProvider>

BeanProviderAsStackBase<MaskProvider,Mask>

MaskProvider

MaskProviderUnary

FillHoles

All Implemented Interfaces:

Provider<Mask>, ProviderAsStack

public class FillHoles
extends MaskProviderUnary

Fills holes in a mask, with options to skip holes touching the border or exceeding a maximum volume.

This class extends MaskProviderUnary to provide functionality for filling holes in binary masks.

Constructor Summary

Constructors

Constructor	Description
FillHoles()

Method Summary

Modifier and Type	Method	Description
Mask	createFromMask(Mask mask)	Creates a Mask given the entity provided by the delegate.
UnitValueExtent	getMaxVolume()	The maximum volume of a hole to be filled.
boolean	isSkipAtBorder()	If true, holes that touch the border of the mask are not filled.
void	setMaxVolume(UnitValueExtent maxVolume)	The maximum volume of a hole to be filled.
void	setSkipAtBorder(boolean skipAtBorder)	If true, holes that touch the border of the mask are not filled.

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProviderUnary

get, getMask, setMask

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

FillHoles

public FillHoles()

Method Details

createFromMask

public Mask createFromMask(Mask mask)
                    throws ProvisionFailedException

Description copied from class: MaskProviderUnary

Creates a Mask given the entity provided by the delegate.

Specified by:

createFromMask in class MaskProviderUnary

Parameters:

mask - the entity provided by the delegate.

Returns:

the created Mask that is returned by the provider.

Throws:

ProvisionFailedException - if the provider cannot complete successfully.

getMaxVolume

public UnitValueExtent getMaxVolume()

The maximum volume of a hole to be filled. If null, no maximum volume constraint is applied.

setMaxVolume

public void setMaxVolume(UnitValueExtent maxVolume)

The maximum volume of a hole to be filled. If null, no maximum volume constraint is applied.

isSkipAtBorder

public boolean isSkipAtBorder()

If true, holes that touch the border of the mask are not filled. Default value is true.

setSkipAtBorder

public void setSkipAtBorder(boolean skipAtBorder)

If true, holes that touch the border of the mask are not filled. Default value is true.