Package org.anchoranalysis.plugin.imagej.bean.mask.provider

Class MorphologicalOperation

Object

AnchorBean<MaskProvider>

InitializableBean<MaskProvider,ImageInitialization>

ImageBean<MaskProvider>

BeanProviderAsStackBase<MaskProvider,Mask>

MaskProvider

MaskProviderUnary

MorphologicalOperation

All Implemented Interfaces:

Provider<Mask>, ProviderAsStack

public class MorphologicalOperation
extends MaskProviderUnary

Applies an ImageJ (2D) morphological operation to each slice

Note that the slices are processed independently of each other, as the procedure only supports 2D morphological operations.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
MorphologicalOperation()

Method Summary

Modifier and Type	Method	Description
Mask	createFromMask(Mask mask)	Creates a Mask given the entity provided by the delegate.
String	getCommand()	One of: open, close, fill, erode, dilate, skel, outline
int	getIterations()	iterations for erode, dilate, open, close
void	setCommand(String command)	One of: open, close, fill, erode, dilate, skel, outline
void	setIterations(int iterations)	iterations for erode, dilate, open, close

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProviderUnary

get, getMask, setMask

Methods inherited from class org.anchoranalysis.image.bean.provider.MaskProvider

getAsStack

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

MorphologicalOperation

public MorphologicalOperation()

Method Details

createFromMask

public Mask createFromMask(Mask mask)
                    throws ProvisionFailedException

Description copied from class: MaskProviderUnary

Creates a Mask given the entity provided by the delegate.

Specified by:

createFromMask in class MaskProviderUnary

Parameters:

mask - the entity provided by the delegate.

Returns:

the created Mask that is returned by the provider.

Throws:

ProvisionFailedException - if the provider cannot complete successfully.

getCommand

public String getCommand()

One of: open, close, fill, erode, dilate, skel, outline

setCommand

public void setCommand(String command)

One of: open, close, fill, erode, dilate, skel, outline

getIterations

public int getIterations()

iterations for erode, dilate, open, close

setIterations

public void setIterations(int iterations)

iterations for erode, dilate, open, close