Package org.anchoranalysis.plugin.io.bean.input.channel

Class NamedChannels

Object

AnchorBean<InputManager<NamedChannelsInputPart>>

InputManager<NamedChannelsInputPart>

InputManagerWithStackReader<NamedChannelsInputPart>

NamedChannelsBase

NamedChannels

public class NamedChannels
extends NamedChannelsBase

An image viewed as a set of channels, each with a unique name.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
NamedChannels()

Method Summary

Modifier and Type	Method	Description
ChannelMapCreator	getChannelMap()
InputManager<FileInput>	getFileInput()
InputsWithDirectory<NamedChannelsInputPart>	inputs(InputManagerParameters parameters)	Creates a list of inputs given particular parameters.
boolean	isUseLastSeriesIndexOnly()
void	setChannelMap(ChannelMapCreator channelMap)
void	setFileInput(InputManager<FileInput> fileInput)
void	setUseLastSeriesIndexOnly(boolean useLastSeriesIndexOnly)

Methods inherited from class org.anchoranalysis.image.io.bean.stack.reader.InputManagerWithStackReader

getStackReader, setStackReader

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

NamedChannels

public NamedChannels()

Method Details

inputs

public InputsWithDirectory<NamedChannelsInputPart> inputs(InputManagerParameters parameters)
                                                   throws InputReadFailedException

Description copied from class: InputManager

Creates a list of inputs given particular parameters.

Specified by:

inputs in class InputManager<NamedChannelsInputPart>

Parameters:

parameters - the parameters.

Returns:

the list of inputs, together with any associated parent directory.

Throws:

InputReadFailedException - if inputs cannot be successfully read from the file-system.

getFileInput

public InputManager<FileInput> getFileInput()

setFileInput

public void setFileInput(InputManager<FileInput> fileInput)

getChannelMap

public ChannelMapCreator getChannelMap()

setChannelMap

public void setChannelMap(ChannelMapCreator channelMap)

isUseLastSeriesIndexOnly

public boolean isUseLastSeriesIndexOnly()

setUseLastSeriesIndexOnly

public void setUseLastSeriesIndexOnly(boolean useLastSeriesIndexOnly)